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Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system

The Pacific white shrimp, with the largest production in shrimp industry, has suffered from multiple severe viral and bacterial diseases, which calls for a more reliable and environmentally friendly system to promote shrimp culture. The “Aquamimicry system”, mimicking the nature of aquatic ecosystem...

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Autores principales: Zeng, Shenzheng, Khoruamkid, Sukontorn, Kongpakdee, Warinphorn, Wei, Dongdong, Yu, Lingfei, Wang, Hao, Deng, Zhixuan, Weng, Shaoping, Huang, Zhijian, He, Jianguo, Satapornvanit, Kriengkrai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7538476/
https://www.ncbi.nlm.nih.gov/pubmed/33025112
http://dx.doi.org/10.1186/s13568-020-01119-y
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author Zeng, Shenzheng
Khoruamkid, Sukontorn
Kongpakdee, Warinphorn
Wei, Dongdong
Yu, Lingfei
Wang, Hao
Deng, Zhixuan
Weng, Shaoping
Huang, Zhijian
He, Jianguo
Satapornvanit, Kriengkrai
author_facet Zeng, Shenzheng
Khoruamkid, Sukontorn
Kongpakdee, Warinphorn
Wei, Dongdong
Yu, Lingfei
Wang, Hao
Deng, Zhixuan
Weng, Shaoping
Huang, Zhijian
He, Jianguo
Satapornvanit, Kriengkrai
author_sort Zeng, Shenzheng
collection PubMed
description The Pacific white shrimp, with the largest production in shrimp industry, has suffered from multiple severe viral and bacterial diseases, which calls for a more reliable and environmentally friendly system to promote shrimp culture. The “Aquamimicry system”, mimicking the nature of aquatic ecosystems for the well-being of aquatic animals, has effectively increased shrimp production and been adapted in many countries. However, the microbial communities in the shrimp intestine and surrounding environment that act as an essential component in Aquamimicry remain largely unknown. In this study, the microbial composition and diversity alteration in shrimp intestine, surrounding water and sediment at different culture stages were investigated by high throughput sequencing of 16S rRNA gene, obtaining 13,562 operational taxonomic units (OTUs). Results showed that the microbial communities in shrimp intestine and surrounding environment were significantly distinct from each other, and 23 distinguished taxa for each habitat were further characterized. The microbial communities differed significantly at different culture stages, confirmed by a great number of OTUs dramatically altered during the culture period. A small part of these altered OTUs were shared between shrimp intestine and surrounding environment, suggesting that the microbial alteration of intestine was not consistent with that of water and sediment. Regarding the high production of Aquamimicry farm used as a case in this study, the dissimilarity between intestinal and surrounding microbiota might be considered as a potential indicator for healthy status of shrimp farming, which provided hints on the appropriate culture practices to improve shrimp production.
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spelling pubmed-75384762020-10-19 Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system Zeng, Shenzheng Khoruamkid, Sukontorn Kongpakdee, Warinphorn Wei, Dongdong Yu, Lingfei Wang, Hao Deng, Zhixuan Weng, Shaoping Huang, Zhijian He, Jianguo Satapornvanit, Kriengkrai AMB Express Original Article The Pacific white shrimp, with the largest production in shrimp industry, has suffered from multiple severe viral and bacterial diseases, which calls for a more reliable and environmentally friendly system to promote shrimp culture. The “Aquamimicry system”, mimicking the nature of aquatic ecosystems for the well-being of aquatic animals, has effectively increased shrimp production and been adapted in many countries. However, the microbial communities in the shrimp intestine and surrounding environment that act as an essential component in Aquamimicry remain largely unknown. In this study, the microbial composition and diversity alteration in shrimp intestine, surrounding water and sediment at different culture stages were investigated by high throughput sequencing of 16S rRNA gene, obtaining 13,562 operational taxonomic units (OTUs). Results showed that the microbial communities in shrimp intestine and surrounding environment were significantly distinct from each other, and 23 distinguished taxa for each habitat were further characterized. The microbial communities differed significantly at different culture stages, confirmed by a great number of OTUs dramatically altered during the culture period. A small part of these altered OTUs were shared between shrimp intestine and surrounding environment, suggesting that the microbial alteration of intestine was not consistent with that of water and sediment. Regarding the high production of Aquamimicry farm used as a case in this study, the dissimilarity between intestinal and surrounding microbiota might be considered as a potential indicator for healthy status of shrimp farming, which provided hints on the appropriate culture practices to improve shrimp production. Springer Berlin Heidelberg 2020-10-06 /pmc/articles/PMC7538476/ /pubmed/33025112 http://dx.doi.org/10.1186/s13568-020-01119-y Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Original Article
Zeng, Shenzheng
Khoruamkid, Sukontorn
Kongpakdee, Warinphorn
Wei, Dongdong
Yu, Lingfei
Wang, Hao
Deng, Zhixuan
Weng, Shaoping
Huang, Zhijian
He, Jianguo
Satapornvanit, Kriengkrai
Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system
title Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system
title_full Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system
title_fullStr Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system
title_full_unstemmed Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system
title_short Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system
title_sort dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in aquamimicry system
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7538476/
https://www.ncbi.nlm.nih.gov/pubmed/33025112
http://dx.doi.org/10.1186/s13568-020-01119-y
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