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Metastable hybridization-based DNA information storage to allow rapid and permanent erasure

The potential of DNA as an information storage medium is rapidly growing due to advances in DNA synthesis and sequencing. However, the chemical stability of DNA challenges the complete erasure of information encoded in DNA sequences. Here, we encode information in a DNA information solution, a mixtu...

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Autores principales: Kim, Jangwon, Bae, Jin H., Baym, Michael, Zhang, David Yu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7538566/
https://www.ncbi.nlm.nih.gov/pubmed/33024123
http://dx.doi.org/10.1038/s41467-020-18842-6
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author Kim, Jangwon
Bae, Jin H.
Baym, Michael
Zhang, David Yu
author_facet Kim, Jangwon
Bae, Jin H.
Baym, Michael
Zhang, David Yu
author_sort Kim, Jangwon
collection PubMed
description The potential of DNA as an information storage medium is rapidly growing due to advances in DNA synthesis and sequencing. However, the chemical stability of DNA challenges the complete erasure of information encoded in DNA sequences. Here, we encode information in a DNA information solution, a mixture of true message- and false message-encoded oligonucleotides, and enables rapid and permanent erasure of information. True messages are differentiated by their hybridization to a "truth marker” oligonucleotide, and only true messages can be read; binding of the truth marker can be effectively randomized even with a brief exposure to the elevated temperature. We show 8 separate bitmap images can be stably encoded and read after storage at 25 °C for 65 days with an average of over 99% correct information recall, which extrapolates to a half-life of over 15 years at 25 °C. Heating to 95 °C for 5 minutes, however, permanently erases the message.
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spelling pubmed-75385662020-10-19 Metastable hybridization-based DNA information storage to allow rapid and permanent erasure Kim, Jangwon Bae, Jin H. Baym, Michael Zhang, David Yu Nat Commun Article The potential of DNA as an information storage medium is rapidly growing due to advances in DNA synthesis and sequencing. However, the chemical stability of DNA challenges the complete erasure of information encoded in DNA sequences. Here, we encode information in a DNA information solution, a mixture of true message- and false message-encoded oligonucleotides, and enables rapid and permanent erasure of information. True messages are differentiated by their hybridization to a "truth marker” oligonucleotide, and only true messages can be read; binding of the truth marker can be effectively randomized even with a brief exposure to the elevated temperature. We show 8 separate bitmap images can be stably encoded and read after storage at 25 °C for 65 days with an average of over 99% correct information recall, which extrapolates to a half-life of over 15 years at 25 °C. Heating to 95 °C for 5 minutes, however, permanently erases the message. Nature Publishing Group UK 2020-10-06 /pmc/articles/PMC7538566/ /pubmed/33024123 http://dx.doi.org/10.1038/s41467-020-18842-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kim, Jangwon
Bae, Jin H.
Baym, Michael
Zhang, David Yu
Metastable hybridization-based DNA information storage to allow rapid and permanent erasure
title Metastable hybridization-based DNA information storage to allow rapid and permanent erasure
title_full Metastable hybridization-based DNA information storage to allow rapid and permanent erasure
title_fullStr Metastable hybridization-based DNA information storage to allow rapid and permanent erasure
title_full_unstemmed Metastable hybridization-based DNA information storage to allow rapid and permanent erasure
title_short Metastable hybridization-based DNA information storage to allow rapid and permanent erasure
title_sort metastable hybridization-based dna information storage to allow rapid and permanent erasure
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7538566/
https://www.ncbi.nlm.nih.gov/pubmed/33024123
http://dx.doi.org/10.1038/s41467-020-18842-6
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