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Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases
The increased interest in (enzymatic) transformations between nucleosides and nucleobases has demanded the development of efficient analytical tools. In this report, we present an update and extension of our recently described method for monitoring these reactions by spectral unmixing. The presented...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7540295/ https://www.ncbi.nlm.nih.gov/pubmed/32324971 http://dx.doi.org/10.1002/cbic.202000204 |
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author | Kaspar, Felix Giessmann, Robert T. Westarp, Sarah Hellendahl, Katja F. Krausch, Niels Thiele, Isabel Walczak, Miriam C. Neubauer, Peter Wagner, Anke |
author_facet | Kaspar, Felix Giessmann, Robert T. Westarp, Sarah Hellendahl, Katja F. Krausch, Niels Thiele, Isabel Walczak, Miriam C. Neubauer, Peter Wagner, Anke |
author_sort | Kaspar, Felix |
collection | PubMed |
description | The increased interest in (enzymatic) transformations between nucleosides and nucleobases has demanded the development of efficient analytical tools. In this report, we present an update and extension of our recently described method for monitoring these reactions by spectral unmixing. The presented method uses differences in the UV absorption spectra of nucleosides and nucleobases after alkaline quenching to derive their ratio based on spectral shape by fitting normalized reference spectra. It is applicable to a broad compound spectrum comprising more than 35 examples, offers HPLC‐like accuracy, ease of handling and significant reductions in both cost and data acquisition time compared to other methods. This contribution details the principle of monitoring reactions by spectral unmixing, gives recommendations regarding solutions to common problems and applications that necessitate special sample treatment. We provide software, workflows and reference spectra that facilitate the straightforward and versatile application of the method. |
format | Online Article Text |
id | pubmed-7540295 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-75402952020-10-09 Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases Kaspar, Felix Giessmann, Robert T. Westarp, Sarah Hellendahl, Katja F. Krausch, Niels Thiele, Isabel Walczak, Miriam C. Neubauer, Peter Wagner, Anke Chembiochem Communications The increased interest in (enzymatic) transformations between nucleosides and nucleobases has demanded the development of efficient analytical tools. In this report, we present an update and extension of our recently described method for monitoring these reactions by spectral unmixing. The presented method uses differences in the UV absorption spectra of nucleosides and nucleobases after alkaline quenching to derive their ratio based on spectral shape by fitting normalized reference spectra. It is applicable to a broad compound spectrum comprising more than 35 examples, offers HPLC‐like accuracy, ease of handling and significant reductions in both cost and data acquisition time compared to other methods. This contribution details the principle of monitoring reactions by spectral unmixing, gives recommendations regarding solutions to common problems and applications that necessitate special sample treatment. We provide software, workflows and reference spectra that facilitate the straightforward and versatile application of the method. John Wiley and Sons Inc. 2020-06-18 2020-09-14 /pmc/articles/PMC7540295/ /pubmed/32324971 http://dx.doi.org/10.1002/cbic.202000204 Text en © 2020 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Communications Kaspar, Felix Giessmann, Robert T. Westarp, Sarah Hellendahl, Katja F. Krausch, Niels Thiele, Isabel Walczak, Miriam C. Neubauer, Peter Wagner, Anke Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases |
title | Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases
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title_full | Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases
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title_fullStr | Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases
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title_full_unstemmed | Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases
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title_short | Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases
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title_sort | spectral unmixing‐based reaction monitoring of transformations between nucleosides and nucleobases |
topic | Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7540295/ https://www.ncbi.nlm.nih.gov/pubmed/32324971 http://dx.doi.org/10.1002/cbic.202000204 |
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