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Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases

The increased interest in (enzymatic) transformations between nucleosides and nucleobases has demanded the development of efficient analytical tools. In this report, we present an update and extension of our recently described method for monitoring these reactions by spectral unmixing. The presented...

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Autores principales: Kaspar, Felix, Giessmann, Robert T., Westarp, Sarah, Hellendahl, Katja F., Krausch, Niels, Thiele, Isabel, Walczak, Miriam C., Neubauer, Peter, Wagner, Anke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7540295/
https://www.ncbi.nlm.nih.gov/pubmed/32324971
http://dx.doi.org/10.1002/cbic.202000204
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author Kaspar, Felix
Giessmann, Robert T.
Westarp, Sarah
Hellendahl, Katja F.
Krausch, Niels
Thiele, Isabel
Walczak, Miriam C.
Neubauer, Peter
Wagner, Anke
author_facet Kaspar, Felix
Giessmann, Robert T.
Westarp, Sarah
Hellendahl, Katja F.
Krausch, Niels
Thiele, Isabel
Walczak, Miriam C.
Neubauer, Peter
Wagner, Anke
author_sort Kaspar, Felix
collection PubMed
description The increased interest in (enzymatic) transformations between nucleosides and nucleobases has demanded the development of efficient analytical tools. In this report, we present an update and extension of our recently described method for monitoring these reactions by spectral unmixing. The presented method uses differences in the UV absorption spectra of nucleosides and nucleobases after alkaline quenching to derive their ratio based on spectral shape by fitting normalized reference spectra. It is applicable to a broad compound spectrum comprising more than 35 examples, offers HPLC‐like accuracy, ease of handling and significant reductions in both cost and data acquisition time compared to other methods. This contribution details the principle of monitoring reactions by spectral unmixing, gives recommendations regarding solutions to common problems and applications that necessitate special sample treatment. We provide software, workflows and reference spectra that facilitate the straightforward and versatile application of the method.
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spelling pubmed-75402952020-10-09 Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases Kaspar, Felix Giessmann, Robert T. Westarp, Sarah Hellendahl, Katja F. Krausch, Niels Thiele, Isabel Walczak, Miriam C. Neubauer, Peter Wagner, Anke Chembiochem Communications The increased interest in (enzymatic) transformations between nucleosides and nucleobases has demanded the development of efficient analytical tools. In this report, we present an update and extension of our recently described method for monitoring these reactions by spectral unmixing. The presented method uses differences in the UV absorption spectra of nucleosides and nucleobases after alkaline quenching to derive their ratio based on spectral shape by fitting normalized reference spectra. It is applicable to a broad compound spectrum comprising more than 35 examples, offers HPLC‐like accuracy, ease of handling and significant reductions in both cost and data acquisition time compared to other methods. This contribution details the principle of monitoring reactions by spectral unmixing, gives recommendations regarding solutions to common problems and applications that necessitate special sample treatment. We provide software, workflows and reference spectra that facilitate the straightforward and versatile application of the method. John Wiley and Sons Inc. 2020-06-18 2020-09-14 /pmc/articles/PMC7540295/ /pubmed/32324971 http://dx.doi.org/10.1002/cbic.202000204 Text en © 2020 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Communications
Kaspar, Felix
Giessmann, Robert T.
Westarp, Sarah
Hellendahl, Katja F.
Krausch, Niels
Thiele, Isabel
Walczak, Miriam C.
Neubauer, Peter
Wagner, Anke
Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases
title Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases
title_full Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases
title_fullStr Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases
title_full_unstemmed Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases
title_short Spectral Unmixing‐Based Reaction Monitoring of Transformations between Nucleosides and Nucleobases
title_sort spectral unmixing‐based reaction monitoring of transformations between nucleosides and nucleobases
topic Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7540295/
https://www.ncbi.nlm.nih.gov/pubmed/32324971
http://dx.doi.org/10.1002/cbic.202000204
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