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The SNP rs13147758 in the HHIP Gene Is Associated With COPD Susceptibility, Serum, and Sputum Protein Levels in Smokers
BACKGROUND: Genetic association studies have identified single nucleotide polymorphisms (SNPs) related to chronic obstructive pulmonary disease (COPD) susceptibility. The aim of this study was to identify HHIP genetic variants associated with COPD, pulmonary function, and serum and sputum HHIP prote...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7541950/ https://www.ncbi.nlm.nih.gov/pubmed/33193570 http://dx.doi.org/10.3389/fgene.2020.00882 |
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author | Ortega-Martínez, Alejandro Pérez-Rubio, Gloria Ambrocio-Ortiz, Enrique Nava-Quiroz, Karol J. Hernández-Zenteno, Rafael de Jesus Abarca-Rojano, Edgar Rodríguez-Llamazares, Sebastián Hernández-Pérez, Andrea García-Gómez, Leonor Ramírez-Venegas, Alejandra Falfán-Valencia, Ramcés |
author_facet | Ortega-Martínez, Alejandro Pérez-Rubio, Gloria Ambrocio-Ortiz, Enrique Nava-Quiroz, Karol J. Hernández-Zenteno, Rafael de Jesus Abarca-Rojano, Edgar Rodríguez-Llamazares, Sebastián Hernández-Pérez, Andrea García-Gómez, Leonor Ramírez-Venegas, Alejandra Falfán-Valencia, Ramcés |
author_sort | Ortega-Martínez, Alejandro |
collection | PubMed |
description | BACKGROUND: Genetic association studies have identified single nucleotide polymorphisms (SNPs) related to chronic obstructive pulmonary disease (COPD) susceptibility. The aim of this study was to identify HHIP genetic variants associated with COPD, pulmonary function, and serum and sputum HHIP protein levels in Mexican mestizo smokers. MATERIALS AND METHODS: Association analysis was performed by carrying out a case–control study in Mexican mestizo smokers comprised of two groups: tobacco-smoking subjects with COPD (COPD-TS, n = 222) and smokers without COPD (SWOC, n = 333). We evaluated three SNPs (rs13147758, rs1828591, and rs13118928) in the HHIP gene. Allele discrimination was accomplished by qPCR using TaqMan probes, and determination of protein levels in the serum and sputum supernatants (SS) was performed using ELISA. RESULTS: Statistically significant differences were observed in the rs13147758 GG genotype (adjusted p = 0.014, OR = 1.95) and the rs13147758-rs1828591 GA haplotype (p = 6.6E-06, OR = 2.65) in the case–control comparison. HHIP protein levels were elevated in SS samples from the COPD-TS group compared to those from the SWOC group (p = 0.03). Based on genotype analysis, HHIP protein levels were lower in the serum samples of rs13147758 GG genotype carriers in the COPD-TS group than in the serum samples of rs13147758 GG genotype carriers from the SWOC group (p < 0.05), but there were no differences in the sputum samples. CONCLUSION: The rs13147758 GG genotype and the rs13147758-rs1828591 GA haplotype are associated with susceptibility to COPD. Furthermore, an association in protein levels was observed between the HHIP rs13147758 genotype and COPD in Mexican mestizo smokers. |
format | Online Article Text |
id | pubmed-7541950 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-75419502020-11-13 The SNP rs13147758 in the HHIP Gene Is Associated With COPD Susceptibility, Serum, and Sputum Protein Levels in Smokers Ortega-Martínez, Alejandro Pérez-Rubio, Gloria Ambrocio-Ortiz, Enrique Nava-Quiroz, Karol J. Hernández-Zenteno, Rafael de Jesus Abarca-Rojano, Edgar Rodríguez-Llamazares, Sebastián Hernández-Pérez, Andrea García-Gómez, Leonor Ramírez-Venegas, Alejandra Falfán-Valencia, Ramcés Front Genet Genetics BACKGROUND: Genetic association studies have identified single nucleotide polymorphisms (SNPs) related to chronic obstructive pulmonary disease (COPD) susceptibility. The aim of this study was to identify HHIP genetic variants associated with COPD, pulmonary function, and serum and sputum HHIP protein levels in Mexican mestizo smokers. MATERIALS AND METHODS: Association analysis was performed by carrying out a case–control study in Mexican mestizo smokers comprised of two groups: tobacco-smoking subjects with COPD (COPD-TS, n = 222) and smokers without COPD (SWOC, n = 333). We evaluated three SNPs (rs13147758, rs1828591, and rs13118928) in the HHIP gene. Allele discrimination was accomplished by qPCR using TaqMan probes, and determination of protein levels in the serum and sputum supernatants (SS) was performed using ELISA. RESULTS: Statistically significant differences were observed in the rs13147758 GG genotype (adjusted p = 0.014, OR = 1.95) and the rs13147758-rs1828591 GA haplotype (p = 6.6E-06, OR = 2.65) in the case–control comparison. HHIP protein levels were elevated in SS samples from the COPD-TS group compared to those from the SWOC group (p = 0.03). Based on genotype analysis, HHIP protein levels were lower in the serum samples of rs13147758 GG genotype carriers in the COPD-TS group than in the serum samples of rs13147758 GG genotype carriers from the SWOC group (p < 0.05), but there were no differences in the sputum samples. CONCLUSION: The rs13147758 GG genotype and the rs13147758-rs1828591 GA haplotype are associated with susceptibility to COPD. Furthermore, an association in protein levels was observed between the HHIP rs13147758 genotype and COPD in Mexican mestizo smokers. Frontiers Media S.A. 2020-09-24 /pmc/articles/PMC7541950/ /pubmed/33193570 http://dx.doi.org/10.3389/fgene.2020.00882 Text en Copyright © 2020 Ortega-Martínez, Pérez-Rubio, Ambrocio-Ortiz, Nava-Quiroz, Hernández-Zenteno, Abarca-Rojano, Rodríguez-Llamazares, Hernández-Pérez, García-Gómez, Ramírez-Venegas and Falfán-Valencia. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Ortega-Martínez, Alejandro Pérez-Rubio, Gloria Ambrocio-Ortiz, Enrique Nava-Quiroz, Karol J. Hernández-Zenteno, Rafael de Jesus Abarca-Rojano, Edgar Rodríguez-Llamazares, Sebastián Hernández-Pérez, Andrea García-Gómez, Leonor Ramírez-Venegas, Alejandra Falfán-Valencia, Ramcés The SNP rs13147758 in the HHIP Gene Is Associated With COPD Susceptibility, Serum, and Sputum Protein Levels in Smokers |
title | The SNP rs13147758 in the HHIP Gene Is Associated With COPD Susceptibility, Serum, and Sputum Protein Levels in Smokers |
title_full | The SNP rs13147758 in the HHIP Gene Is Associated With COPD Susceptibility, Serum, and Sputum Protein Levels in Smokers |
title_fullStr | The SNP rs13147758 in the HHIP Gene Is Associated With COPD Susceptibility, Serum, and Sputum Protein Levels in Smokers |
title_full_unstemmed | The SNP rs13147758 in the HHIP Gene Is Associated With COPD Susceptibility, Serum, and Sputum Protein Levels in Smokers |
title_short | The SNP rs13147758 in the HHIP Gene Is Associated With COPD Susceptibility, Serum, and Sputum Protein Levels in Smokers |
title_sort | snp rs13147758 in the hhip gene is associated with copd susceptibility, serum, and sputum protein levels in smokers |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7541950/ https://www.ncbi.nlm.nih.gov/pubmed/33193570 http://dx.doi.org/10.3389/fgene.2020.00882 |
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