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Multiplex and visual detection of African Swine Fever Virus (ASFV) based on Hive-Chip and direct loop-mediated isothermal amplification

African swine fever is caused by African swine fever virus (ASFV), and has a mortality rate approaching 100%. It has already caused tremendous economy lost around the world. Without effective vaccine, rapid and accurate on-site detection plays an indispensable role in controlling outbreaks. Herein,...

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Autores principales: Zhu, Yuan-Shou, Shao, Ning, Chen, Jian-Wei, Qi, Wen-Bao, Li, Yang, Liu, Peng, Chen, Yan-Jing, Bian, Su-Ying, Zhang, Yan, Tao, Sheng-Ce
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7542229/
https://www.ncbi.nlm.nih.gov/pubmed/33218487
http://dx.doi.org/10.1016/j.aca.2020.10.011
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author Zhu, Yuan-Shou
Shao, Ning
Chen, Jian-Wei
Qi, Wen-Bao
Li, Yang
Liu, Peng
Chen, Yan-Jing
Bian, Su-Ying
Zhang, Yan
Tao, Sheng-Ce
author_facet Zhu, Yuan-Shou
Shao, Ning
Chen, Jian-Wei
Qi, Wen-Bao
Li, Yang
Liu, Peng
Chen, Yan-Jing
Bian, Su-Ying
Zhang, Yan
Tao, Sheng-Ce
author_sort Zhu, Yuan-Shou
collection PubMed
description African swine fever is caused by African swine fever virus (ASFV), and has a mortality rate approaching 100%. It has already caused tremendous economy lost around the world. Without effective vaccine, rapid and accurate on-site detection plays an indispensable role in controlling outbreaks. Herein, by combining Hive-Chip and direct loop-mediated isothermal amplification (LAMP), we establish a multiplex and visual detection platform. LAMP primers targeting five ASFV genes (B646L, B962L, C717R, D1133L, and G1340L) were designed and pre-fixed in Hive-Chip. On-chip LAMP showed the limits of detection (LOD) of ASFV synthetic DNAs and mock samples are 30 and 50 copies per microliter, respectively, and there is no cross-reaction among the target genes. The overall performance of our platform is comparable to that of the commercial kits. From sample preparation to results readout, the entire process takes less than 70 min. Multiplex detection of real samples of ASFV and other swine viruses further demonstrates the high sensitivity and specificity of Hive-Chip. Overall, our platform provides a promising option for on-site, fast and accurate detection of ASFV.
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spelling pubmed-75422292020-10-08 Multiplex and visual detection of African Swine Fever Virus (ASFV) based on Hive-Chip and direct loop-mediated isothermal amplification Zhu, Yuan-Shou Shao, Ning Chen, Jian-Wei Qi, Wen-Bao Li, Yang Liu, Peng Chen, Yan-Jing Bian, Su-Ying Zhang, Yan Tao, Sheng-Ce Anal Chim Acta Article African swine fever is caused by African swine fever virus (ASFV), and has a mortality rate approaching 100%. It has already caused tremendous economy lost around the world. Without effective vaccine, rapid and accurate on-site detection plays an indispensable role in controlling outbreaks. Herein, by combining Hive-Chip and direct loop-mediated isothermal amplification (LAMP), we establish a multiplex and visual detection platform. LAMP primers targeting five ASFV genes (B646L, B962L, C717R, D1133L, and G1340L) were designed and pre-fixed in Hive-Chip. On-chip LAMP showed the limits of detection (LOD) of ASFV synthetic DNAs and mock samples are 30 and 50 copies per microliter, respectively, and there is no cross-reaction among the target genes. The overall performance of our platform is comparable to that of the commercial kits. From sample preparation to results readout, the entire process takes less than 70 min. Multiplex detection of real samples of ASFV and other swine viruses further demonstrates the high sensitivity and specificity of Hive-Chip. Overall, our platform provides a promising option for on-site, fast and accurate detection of ASFV. Elsevier B.V. 2020-12-15 2020-10-08 /pmc/articles/PMC7542229/ /pubmed/33218487 http://dx.doi.org/10.1016/j.aca.2020.10.011 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Zhu, Yuan-Shou
Shao, Ning
Chen, Jian-Wei
Qi, Wen-Bao
Li, Yang
Liu, Peng
Chen, Yan-Jing
Bian, Su-Ying
Zhang, Yan
Tao, Sheng-Ce
Multiplex and visual detection of African Swine Fever Virus (ASFV) based on Hive-Chip and direct loop-mediated isothermal amplification
title Multiplex and visual detection of African Swine Fever Virus (ASFV) based on Hive-Chip and direct loop-mediated isothermal amplification
title_full Multiplex and visual detection of African Swine Fever Virus (ASFV) based on Hive-Chip and direct loop-mediated isothermal amplification
title_fullStr Multiplex and visual detection of African Swine Fever Virus (ASFV) based on Hive-Chip and direct loop-mediated isothermal amplification
title_full_unstemmed Multiplex and visual detection of African Swine Fever Virus (ASFV) based on Hive-Chip and direct loop-mediated isothermal amplification
title_short Multiplex and visual detection of African Swine Fever Virus (ASFV) based on Hive-Chip and direct loop-mediated isothermal amplification
title_sort multiplex and visual detection of african swine fever virus (asfv) based on hive-chip and direct loop-mediated isothermal amplification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7542229/
https://www.ncbi.nlm.nih.gov/pubmed/33218487
http://dx.doi.org/10.1016/j.aca.2020.10.011
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