Cargando…
Melting Points of OPC and OPC3 Water Models
[Image: see text] A recently introduced family of globally optimal water models, OPC, has shown promise in a variety of biomolecular simulations, but properties of these water models outside of the liquid phase remain mostly unexplored. Here, we contribute to filling the gap by reporting melting tem...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2020
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7542584/ https://www.ncbi.nlm.nih.gov/pubmed/33043187 http://dx.doi.org/10.1021/acsomega.0c02638 |
_version_ | 1783591577443106816 |
---|---|
author | Xiong, Yeyue Shabane, Parviz Seifpanahi Onufriev, Alexey V. |
author_facet | Xiong, Yeyue Shabane, Parviz Seifpanahi Onufriev, Alexey V. |
author_sort | Xiong, Yeyue |
collection | PubMed |
description | [Image: see text] A recently introduced family of globally optimal water models, OPC, has shown promise in a variety of biomolecular simulations, but properties of these water models outside of the liquid phase remain mostly unexplored. Here, we contribute to filling the gap by reporting melting temperatures of ice I(h) of OPC and OPC3 water models. Through the direct coexistence method, which we make available in the AMBER package, the melting points of OPC and OPC3 are estimated as 242 and 210 K, similar to TIP4P-Ew and SPC/E models, respectively, and appreciably below the experimental value of 273.15 K under 1 bar pressure. Water models of the OPC family were optimized to best reproduce water properties in the liquid phase where these models offer noteworthy accuracy advantages over many models of previous generations. It is not surprising that the accuracy of OPC models in describing the phase transition to the solid state does not appear to offer similar improvements. The new anisotropic barostat option implemented in AMBER may benefit system preparation and simulation outside of the direct coexistence applications, such as modeling of membranes or very long DNA strands. |
format | Online Article Text |
id | pubmed-7542584 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-75425842020-10-09 Melting Points of OPC and OPC3 Water Models Xiong, Yeyue Shabane, Parviz Seifpanahi Onufriev, Alexey V. ACS Omega [Image: see text] A recently introduced family of globally optimal water models, OPC, has shown promise in a variety of biomolecular simulations, but properties of these water models outside of the liquid phase remain mostly unexplored. Here, we contribute to filling the gap by reporting melting temperatures of ice I(h) of OPC and OPC3 water models. Through the direct coexistence method, which we make available in the AMBER package, the melting points of OPC and OPC3 are estimated as 242 and 210 K, similar to TIP4P-Ew and SPC/E models, respectively, and appreciably below the experimental value of 273.15 K under 1 bar pressure. Water models of the OPC family were optimized to best reproduce water properties in the liquid phase where these models offer noteworthy accuracy advantages over many models of previous generations. It is not surprising that the accuracy of OPC models in describing the phase transition to the solid state does not appear to offer similar improvements. The new anisotropic barostat option implemented in AMBER may benefit system preparation and simulation outside of the direct coexistence applications, such as modeling of membranes or very long DNA strands. American Chemical Society 2020-09-22 /pmc/articles/PMC7542584/ /pubmed/33043187 http://dx.doi.org/10.1021/acsomega.0c02638 Text en This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Xiong, Yeyue Shabane, Parviz Seifpanahi Onufriev, Alexey V. Melting Points of OPC and OPC3 Water Models |
title | Melting Points of OPC and OPC3 Water Models |
title_full | Melting Points of OPC and OPC3 Water Models |
title_fullStr | Melting Points of OPC and OPC3 Water Models |
title_full_unstemmed | Melting Points of OPC and OPC3 Water Models |
title_short | Melting Points of OPC and OPC3 Water Models |
title_sort | melting points of opc and opc3 water models |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7542584/ https://www.ncbi.nlm.nih.gov/pubmed/33043187 http://dx.doi.org/10.1021/acsomega.0c02638 |
work_keys_str_mv | AT xiongyeyue meltingpointsofopcandopc3watermodels AT shabaneparvizseifpanahi meltingpointsofopcandopc3watermodels AT onufrievalexeyv meltingpointsofopcandopc3watermodels |