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The Energetic Origin of Different Catalytic Activities in Temperature-Adapted Trypsins

[Image: see text] Psychrophilic enzymes were always observed to have higher catalytic activity (k(cat)) than their mesophilic homologs at room temperature, while the origin of this phenomenon remains obscure. Here, we used two different temperature-adapted trypsins, the psychrophilic Atlantic cod tr...

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Autores principales: Xia, Yuan-Ling, Li, Yong-Ping, Fu, Yun-Xin, Liu, Shu-Qun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7542600/
https://www.ncbi.nlm.nih.gov/pubmed/33043186
http://dx.doi.org/10.1021/acsomega.0c02401
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author Xia, Yuan-Ling
Li, Yong-Ping
Fu, Yun-Xin
Liu, Shu-Qun
author_facet Xia, Yuan-Ling
Li, Yong-Ping
Fu, Yun-Xin
Liu, Shu-Qun
author_sort Xia, Yuan-Ling
collection PubMed
description [Image: see text] Psychrophilic enzymes were always observed to have higher catalytic activity (k(cat)) than their mesophilic homologs at room temperature, while the origin of this phenomenon remains obscure. Here, we used two different temperature-adapted trypsins, the psychrophilic Atlantic cod trypsin (ACT) and the mesophilic bovine trypsin (BT), as a model system to explore the energetic origin of their different catalytic activities using computational methods. The results reproduce the characteristic changing trends in the activation free energy, activation enthalpy, and activation entropy between the psychrophilic and mesophilic enzymes, where, in particular, the slightly decreased activation free energy of ACT is determined by its considerably reduced activation enthalpy rather than by its more negative activation entropy compared to BT. The calculated electrostatic contributions to the solvation free energies in the reactant state/ground sate (RS/GS) and transition state (TS) show that, going from BT to ACT, the TS stabilization has a predominant effect over the RS stabilization on lowering the activation enthalpy of ACT. Comparison between the solvation energy components reveals a more optimized electrostatic preorganization to the TS in ACT, which provides a larger stabilization to the TS through reducing the reorganization energy, thus resulting in the lower activation enthalpy and hence lower activation free energy of ACT. Thus, it can be concluded that it is the difference in the protein electrostatic environment, and hence its different stabilizing effects on the TS, that brings about the different catalytic activities of different temperature-adapted trypsins.
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spelling pubmed-75426002020-10-09 The Energetic Origin of Different Catalytic Activities in Temperature-Adapted Trypsins Xia, Yuan-Ling Li, Yong-Ping Fu, Yun-Xin Liu, Shu-Qun ACS Omega [Image: see text] Psychrophilic enzymes were always observed to have higher catalytic activity (k(cat)) than their mesophilic homologs at room temperature, while the origin of this phenomenon remains obscure. Here, we used two different temperature-adapted trypsins, the psychrophilic Atlantic cod trypsin (ACT) and the mesophilic bovine trypsin (BT), as a model system to explore the energetic origin of their different catalytic activities using computational methods. The results reproduce the characteristic changing trends in the activation free energy, activation enthalpy, and activation entropy between the psychrophilic and mesophilic enzymes, where, in particular, the slightly decreased activation free energy of ACT is determined by its considerably reduced activation enthalpy rather than by its more negative activation entropy compared to BT. The calculated electrostatic contributions to the solvation free energies in the reactant state/ground sate (RS/GS) and transition state (TS) show that, going from BT to ACT, the TS stabilization has a predominant effect over the RS stabilization on lowering the activation enthalpy of ACT. Comparison between the solvation energy components reveals a more optimized electrostatic preorganization to the TS in ACT, which provides a larger stabilization to the TS through reducing the reorganization energy, thus resulting in the lower activation enthalpy and hence lower activation free energy of ACT. Thus, it can be concluded that it is the difference in the protein electrostatic environment, and hence its different stabilizing effects on the TS, that brings about the different catalytic activities of different temperature-adapted trypsins. American Chemical Society 2020-09-23 /pmc/articles/PMC7542600/ /pubmed/33043186 http://dx.doi.org/10.1021/acsomega.0c02401 Text en This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Xia, Yuan-Ling
Li, Yong-Ping
Fu, Yun-Xin
Liu, Shu-Qun
The Energetic Origin of Different Catalytic Activities in Temperature-Adapted Trypsins
title The Energetic Origin of Different Catalytic Activities in Temperature-Adapted Trypsins
title_full The Energetic Origin of Different Catalytic Activities in Temperature-Adapted Trypsins
title_fullStr The Energetic Origin of Different Catalytic Activities in Temperature-Adapted Trypsins
title_full_unstemmed The Energetic Origin of Different Catalytic Activities in Temperature-Adapted Trypsins
title_short The Energetic Origin of Different Catalytic Activities in Temperature-Adapted Trypsins
title_sort energetic origin of different catalytic activities in temperature-adapted trypsins
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7542600/
https://www.ncbi.nlm.nih.gov/pubmed/33043186
http://dx.doi.org/10.1021/acsomega.0c02401
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