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Highly Multiplexed Label-Free Imaging Sensor for Accurate Quantification of Small-Molecule Binding Kinetics

[Image: see text] Investigating the binding interaction of small molecules to large ligands is a compelling task for the field of drug development, as well as agro-biotechnology, since a common trait of drugs and toxins is often a low molecular weight (MW). Here, we improve the limit of detection of...

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Autores principales: Chiodi, Elisa, Marn, Allison M., Geib, Matthew T., Ekiz Kanik, Fulya, Rejman, John, AnKrapp, David, Ünlü, M. Selim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7542848/
https://www.ncbi.nlm.nih.gov/pubmed/33043215
http://dx.doi.org/10.1021/acsomega.0c03708
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author Chiodi, Elisa
Marn, Allison M.
Geib, Matthew T.
Ekiz Kanik, Fulya
Rejman, John
AnKrapp, David
Ünlü, M. Selim
author_facet Chiodi, Elisa
Marn, Allison M.
Geib, Matthew T.
Ekiz Kanik, Fulya
Rejman, John
AnKrapp, David
Ünlü, M. Selim
author_sort Chiodi, Elisa
collection PubMed
description [Image: see text] Investigating the binding interaction of small molecules to large ligands is a compelling task for the field of drug development, as well as agro-biotechnology, since a common trait of drugs and toxins is often a low molecular weight (MW). Here, we improve the limit of detection of the Interferometric Reflectance Imaging Sensor (IRIS), a label-free, highly multiplexed biosensor, to perform small-molecule screening. In this work, characterization of small molecules binding to immobilized probes in a microarray format is demonstrated, with a limit of detection of 1 pg/mm(2) in mass density. First, as a proof of concept to show the impact of spatial and temporal averaging on the system noise, detection of biotin (MW = 244.3 Da) binding to a streptavidin-functionalized chip is performed and the parameters are tuned to achieve maximum signal-to-noise ratio (SNR ≈ 34). The optimized system is then applied to the screening of a 20-multiplexed antibody chip against fumonisin B1 (MW = 721.8 Da), a mycotoxin found in cereal grains. The simultaneously recorded binding curves yield an SNR ≈ 8. Five out of twenty antibodies are also screened against the toxin in a lateral flow assay, obtaining consistent results. With the demonstrated noise characteristics, further sensitivity improvements are expected with the advancement of camera sensor technology.
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spelling pubmed-75428482020-10-09 Highly Multiplexed Label-Free Imaging Sensor for Accurate Quantification of Small-Molecule Binding Kinetics Chiodi, Elisa Marn, Allison M. Geib, Matthew T. Ekiz Kanik, Fulya Rejman, John AnKrapp, David Ünlü, M. Selim ACS Omega [Image: see text] Investigating the binding interaction of small molecules to large ligands is a compelling task for the field of drug development, as well as agro-biotechnology, since a common trait of drugs and toxins is often a low molecular weight (MW). Here, we improve the limit of detection of the Interferometric Reflectance Imaging Sensor (IRIS), a label-free, highly multiplexed biosensor, to perform small-molecule screening. In this work, characterization of small molecules binding to immobilized probes in a microarray format is demonstrated, with a limit of detection of 1 pg/mm(2) in mass density. First, as a proof of concept to show the impact of spatial and temporal averaging on the system noise, detection of biotin (MW = 244.3 Da) binding to a streptavidin-functionalized chip is performed and the parameters are tuned to achieve maximum signal-to-noise ratio (SNR ≈ 34). The optimized system is then applied to the screening of a 20-multiplexed antibody chip against fumonisin B1 (MW = 721.8 Da), a mycotoxin found in cereal grains. The simultaneously recorded binding curves yield an SNR ≈ 8. Five out of twenty antibodies are also screened against the toxin in a lateral flow assay, obtaining consistent results. With the demonstrated noise characteristics, further sensitivity improvements are expected with the advancement of camera sensor technology. American Chemical Society 2020-09-25 /pmc/articles/PMC7542848/ /pubmed/33043215 http://dx.doi.org/10.1021/acsomega.0c03708 Text en This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Chiodi, Elisa
Marn, Allison M.
Geib, Matthew T.
Ekiz Kanik, Fulya
Rejman, John
AnKrapp, David
Ünlü, M. Selim
Highly Multiplexed Label-Free Imaging Sensor for Accurate Quantification of Small-Molecule Binding Kinetics
title Highly Multiplexed Label-Free Imaging Sensor for Accurate Quantification of Small-Molecule Binding Kinetics
title_full Highly Multiplexed Label-Free Imaging Sensor for Accurate Quantification of Small-Molecule Binding Kinetics
title_fullStr Highly Multiplexed Label-Free Imaging Sensor for Accurate Quantification of Small-Molecule Binding Kinetics
title_full_unstemmed Highly Multiplexed Label-Free Imaging Sensor for Accurate Quantification of Small-Molecule Binding Kinetics
title_short Highly Multiplexed Label-Free Imaging Sensor for Accurate Quantification of Small-Molecule Binding Kinetics
title_sort highly multiplexed label-free imaging sensor for accurate quantification of small-molecule binding kinetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7542848/
https://www.ncbi.nlm.nih.gov/pubmed/33043215
http://dx.doi.org/10.1021/acsomega.0c03708
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