Cargando…

Observed and estimated prevalence of Covid-19 in Italy: How to estimate the total cases from medical swabs data

During the Covid-19 pandemic in Italy, official data are collected with medical swabs following a pure convenience criterion which, at least in an early phase, has privileged the exam of patients showing evident symptoms. However, there are evidences of a very high proportion of asymptomatic patient...

Descripción completa

Detalles Bibliográficos
Autores principales: Bassi, F., Arbia, G., Falorsi, P.D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7543749/
https://www.ncbi.nlm.nih.gov/pubmed/33066965
http://dx.doi.org/10.1016/j.scitotenv.2020.142799
_version_ 1783591726829535232
author Bassi, F.
Arbia, G.
Falorsi, P.D.
author_facet Bassi, F.
Arbia, G.
Falorsi, P.D.
author_sort Bassi, F.
collection PubMed
description During the Covid-19 pandemic in Italy, official data are collected with medical swabs following a pure convenience criterion which, at least in an early phase, has privileged the exam of patients showing evident symptoms. However, there are evidences of a very high proportion of asymptomatic patients. In this situation, in order to estimate the real number of infected (and to estimate the lethality rate), it should be necessary to run a properly designed sample survey through which it would be possible to calculate the probability of inclusion and hence draw sound probabilistic inference. Unfortunately, the survey run by the Italian Statistical Institute encountered many field difficulties. Some researchers proposed estimates of the total prevalence based on various approaches, including epidemiologic models, time series and the analysis of data collected in countries that faced the epidemic in earlier times. In this paper, we propose to estimate the prevalence of Covid-19 in Italy by reweighting the available official data published by the Istituto Superiore di Sanità so as to obtain a more representative sample of the Italian population. Reweighting is a procedure commonly used to artificially modify the sample composition so as to obtain a distribution which is more similar to the population. In this paper, we will use post-stratification of the official data, in order to derive the weights necessary for reweighting the sample results, using age and gender as post-stratification variables, thus obtaining more reliable estimation of prevalence and lethality. Specifically, for Italy, we obtain a prevalence of 9%. The proposed methodology represents a reasonable approximation while waiting for more reliable data obtained with a properly designed national sample survey and that it could be further improved if more data were made available.
format Online
Article
Text
id pubmed-7543749
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier B.V.
record_format MEDLINE/PubMed
spelling pubmed-75437492020-10-09 Observed and estimated prevalence of Covid-19 in Italy: How to estimate the total cases from medical swabs data Bassi, F. Arbia, G. Falorsi, P.D. Sci Total Environ Article During the Covid-19 pandemic in Italy, official data are collected with medical swabs following a pure convenience criterion which, at least in an early phase, has privileged the exam of patients showing evident symptoms. However, there are evidences of a very high proportion of asymptomatic patients. In this situation, in order to estimate the real number of infected (and to estimate the lethality rate), it should be necessary to run a properly designed sample survey through which it would be possible to calculate the probability of inclusion and hence draw sound probabilistic inference. Unfortunately, the survey run by the Italian Statistical Institute encountered many field difficulties. Some researchers proposed estimates of the total prevalence based on various approaches, including epidemiologic models, time series and the analysis of data collected in countries that faced the epidemic in earlier times. In this paper, we propose to estimate the prevalence of Covid-19 in Italy by reweighting the available official data published by the Istituto Superiore di Sanità so as to obtain a more representative sample of the Italian population. Reweighting is a procedure commonly used to artificially modify the sample composition so as to obtain a distribution which is more similar to the population. In this paper, we will use post-stratification of the official data, in order to derive the weights necessary for reweighting the sample results, using age and gender as post-stratification variables, thus obtaining more reliable estimation of prevalence and lethality. Specifically, for Italy, we obtain a prevalence of 9%. The proposed methodology represents a reasonable approximation while waiting for more reliable data obtained with a properly designed national sample survey and that it could be further improved if more data were made available. Elsevier B.V. 2021-04-10 2020-10-08 /pmc/articles/PMC7543749/ /pubmed/33066965 http://dx.doi.org/10.1016/j.scitotenv.2020.142799 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Bassi, F.
Arbia, G.
Falorsi, P.D.
Observed and estimated prevalence of Covid-19 in Italy: How to estimate the total cases from medical swabs data
title Observed and estimated prevalence of Covid-19 in Italy: How to estimate the total cases from medical swabs data
title_full Observed and estimated prevalence of Covid-19 in Italy: How to estimate the total cases from medical swabs data
title_fullStr Observed and estimated prevalence of Covid-19 in Italy: How to estimate the total cases from medical swabs data
title_full_unstemmed Observed and estimated prevalence of Covid-19 in Italy: How to estimate the total cases from medical swabs data
title_short Observed and estimated prevalence of Covid-19 in Italy: How to estimate the total cases from medical swabs data
title_sort observed and estimated prevalence of covid-19 in italy: how to estimate the total cases from medical swabs data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7543749/
https://www.ncbi.nlm.nih.gov/pubmed/33066965
http://dx.doi.org/10.1016/j.scitotenv.2020.142799
work_keys_str_mv AT bassif observedandestimatedprevalenceofcovid19initalyhowtoestimatethetotalcasesfrommedicalswabsdata
AT arbiag observedandestimatedprevalenceofcovid19initalyhowtoestimatethetotalcasesfrommedicalswabsdata
AT falorsipd observedandestimatedprevalenceofcovid19initalyhowtoestimatethetotalcasesfrommedicalswabsdata