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eIF4G-driven translation initiation of downstream ORFs in mammalian cells

Comprehensive genome-wide analysis has revealed the presence of translational elements in the 3′ untranslated regions (UTRs) of human transcripts. However, the mechanisms by which translation is initiated in 3′ UTRs and the physiological function of their products remain unclear. This study showed t...

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Autores principales: Nobuta, Risa, Machida, Kodai, Sato, Misaki, Hashimoto, Satoshi, Toriumi, Yasuhito, Nakajima, Shizuka, Suto, Daiki, Imataka, Hiroaki, Inada, Toshifumi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
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Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7544200/
https://www.ncbi.nlm.nih.gov/pubmed/32941651
http://dx.doi.org/10.1093/nar/gkaa728
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author Nobuta, Risa
Machida, Kodai
Sato, Misaki
Hashimoto, Satoshi
Toriumi, Yasuhito
Nakajima, Shizuka
Suto, Daiki
Imataka, Hiroaki
Inada, Toshifumi
author_facet Nobuta, Risa
Machida, Kodai
Sato, Misaki
Hashimoto, Satoshi
Toriumi, Yasuhito
Nakajima, Shizuka
Suto, Daiki
Imataka, Hiroaki
Inada, Toshifumi
author_sort Nobuta, Risa
collection PubMed
description Comprehensive genome-wide analysis has revealed the presence of translational elements in the 3′ untranslated regions (UTRs) of human transcripts. However, the mechanisms by which translation is initiated in 3′ UTRs and the physiological function of their products remain unclear. This study showed that eIF4G drives the translation of various downstream open reading frames (dORFs) in 3′ UTRs. The 3′ UTR of GCH1, which encodes GTP cyclohydrolase 1, contains an internal ribosome entry site (IRES) that initiates the translation of dORFs. An in vitro reconstituted translation system showed that the IRES in the 3′ UTR of GCH1 required eIF4G and conventional translation initiation factors, except eIF4E, for AUG-initiated translation of dORFs. The 3′ UTR of GCH1-mediated translation was resistant to the mTOR inhibitor Torin 1, which inhibits cap-dependent initiation by increasing eIF4E-unbound eIF4G. eIF4G was also required for the activity of various elements, including polyU and poliovirus type 2, a short element thought to recruit ribosomes by base-pairing with 18S rRNA. These findings indicate that eIF4G mediates translation initiation of various ORFs in mammalian cells, suggesting that the 3′ UTRs of mRNAs may encode various products.
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spelling pubmed-75442002020-10-15 eIF4G-driven translation initiation of downstream ORFs in mammalian cells Nobuta, Risa Machida, Kodai Sato, Misaki Hashimoto, Satoshi Toriumi, Yasuhito Nakajima, Shizuka Suto, Daiki Imataka, Hiroaki Inada, Toshifumi Nucleic Acids Res RNA and RNA-protein complexes Comprehensive genome-wide analysis has revealed the presence of translational elements in the 3′ untranslated regions (UTRs) of human transcripts. However, the mechanisms by which translation is initiated in 3′ UTRs and the physiological function of their products remain unclear. This study showed that eIF4G drives the translation of various downstream open reading frames (dORFs) in 3′ UTRs. The 3′ UTR of GCH1, which encodes GTP cyclohydrolase 1, contains an internal ribosome entry site (IRES) that initiates the translation of dORFs. An in vitro reconstituted translation system showed that the IRES in the 3′ UTR of GCH1 required eIF4G and conventional translation initiation factors, except eIF4E, for AUG-initiated translation of dORFs. The 3′ UTR of GCH1-mediated translation was resistant to the mTOR inhibitor Torin 1, which inhibits cap-dependent initiation by increasing eIF4E-unbound eIF4G. eIF4G was also required for the activity of various elements, including polyU and poliovirus type 2, a short element thought to recruit ribosomes by base-pairing with 18S rRNA. These findings indicate that eIF4G mediates translation initiation of various ORFs in mammalian cells, suggesting that the 3′ UTRs of mRNAs may encode various products. Oxford University Press 2020-09-17 /pmc/articles/PMC7544200/ /pubmed/32941651 http://dx.doi.org/10.1093/nar/gkaa728 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle RNA and RNA-protein complexes
Nobuta, Risa
Machida, Kodai
Sato, Misaki
Hashimoto, Satoshi
Toriumi, Yasuhito
Nakajima, Shizuka
Suto, Daiki
Imataka, Hiroaki
Inada, Toshifumi
eIF4G-driven translation initiation of downstream ORFs in mammalian cells
title eIF4G-driven translation initiation of downstream ORFs in mammalian cells
title_full eIF4G-driven translation initiation of downstream ORFs in mammalian cells
title_fullStr eIF4G-driven translation initiation of downstream ORFs in mammalian cells
title_full_unstemmed eIF4G-driven translation initiation of downstream ORFs in mammalian cells
title_short eIF4G-driven translation initiation of downstream ORFs in mammalian cells
title_sort eif4g-driven translation initiation of downstream orfs in mammalian cells
topic RNA and RNA-protein complexes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7544200/
https://www.ncbi.nlm.nih.gov/pubmed/32941651
http://dx.doi.org/10.1093/nar/gkaa728
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