Cargando…

Rapid Genomic Characterization of SARS-CoV-2 by Direct Amplicon-Based Sequencing Through Comparison of MinION and Illumina iSeq100(TM) System

Global human health is increasingly challenged by emerging viral threats, especially those observed over the last 20 years with coronavirus-related human diseases, such as the Severe Acute Respiratory Syndrome (SARS) and the Middle East Respiratory Syndrome (MERS). Recently, in late December 2019, a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hourdel, Véronique, Kwasiborski, Aurelia, Balière, Charlotte, Matheus, Séverine, Batéjat, Christophe Frédéric, Manuguerra, Jean-Claude, Vanhomwegen, Jessica, Caro, Valérie
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2020
Materias:	Microbiology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7546329/ https://www.ncbi.nlm.nih.gov/pubmed/33101244 http://dx.doi.org/10.3389/fmicb.2020.571328

Ejemplares similares

Complete Genome Sequences of Monkeypox Virus from a French Clinical Sample and the Corresponding Isolated Strain, Obtained Using Nanopore Sequencing
por: Balière, Charlotte, et al.
Publicado: (2023)

Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding
por: Nakao, Ryohei, et al.
Publicado: (2021)

Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches
por: George, Sophie, et al.
Publicado: (2017)

Corrigendum: Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches
por: George, Sophie, et al.
Publicado: (2018)

Gut microbiome profiling of neonates using Nanopore MinION and Illumina MiSeq sequencing
por: Cha, Teahyen, et al.
Publicado: (2023)

iSeq 100 for metagenomic pathogen screening in ticks
por: Kim, Ju Yeong, et al.
Publicado: (2021)

Evaluation and application of RNA-Seq by MinION
por: Seki, Masahide, et al.
Publicado: (2019)

Multi-laboratory evaluation of the Illumina iSeq platform for whole genome sequencing of Salmonella, Escherichia coli and Listeria
por: Mitchell, Patrick K., et al.
Publicado: (2022)

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer
por: Kilianski, Andy, et al.
Publicado: (2015)

Simultaneous amplicon analysis of multiple soil samples using MinION sequencing
por: Kurokochi, Hiroyuki, et al.
Publicado: (2021)

Optimized conditions for Listeria, Salmonella and Escherichia whole genome sequencing using the Illumina iSeq100 platform with point-and-click bioinformatic analysis
por: Alvarez Narvaez, Sonsiray, et al.
Publicado: (2022)

Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data
por: Krasnov, George, et al.
Publicado: (2021)

Fusobacterium Genomics Using MinION and Illumina Sequencing Enables Genome Completion and Correction
por: Todd, S. Michelle, et al.
Publicado: (2018)

De novo assembly of middle-sized genome using MinION and Illumina sequencers
por: Minei, Ryuhei, et al.
Publicado: (2018)

Technical comparison of MinIon and Illumina technologies for genotyping Chikungunya virus in clinical samples
por: de Souza, Leandro Menezes, et al.
Publicado: (2023)

First Identification of Human Adenovirus Subtype 21a in China With MinION and Illumina Sequencers
por: Ye, Fuqiang, et al.
Publicado: (2020)

Examination of the microbiota of normal cow milk using MinION(TM) nanopore sequencing
por: SHINOZUKA, Yasunori, et al.
Publicado: (2021)

Closed Genome Sequences and Antimicrobial Resistance Profiles of Eight Wild Bird Salmonella Isolates Obtained with MinION and Illumina MiSeq Sequencing
por: Naushad, Sohail, et al.
Publicado: (2020)

Determining the Suitability of MinION’s Direct RNA and DNA Amplicon Sequencing for Viral Subtype Identification
por: Leigh, Deborah M., et al.
Publicado: (2020)

Proof of concept for multiplex amplicon sequencing for mutation identification using the MinION nanopore sequencer
por: Whitford, Whitney, et al.
Publicado: (2022)

Oxford Nanopore MinION Direct RNA-Seq for Systems Biology
por: Pyatnitskiy, Mikhail A., et al.
Publicado: (2021)

Genomic and resistome analysis of Alcaligenes faecalis strain PGB1 by Nanopore MinION and Illumina Technologies
por: Lang, Jidong, et al.
Publicado: (2022)

Sequencing Illumina libraries at high accuracy on the ONT MinION using R2C2
por: Zee, Alexander, et al.
Publicado: (2022)

Genome Sequencing of Sub-Arctic Mesomycetozoean Sphaeroforma sirkka Strain B5, Performed with the Oxford Nanopore minION and Illumina HiSeq Systems
por: Ducluzeau, A.-L., et al.
Publicado: (2018)

A preliminary study on the potential of Nanopore MinION and Illumina MiSeq 16S rRNA gene sequencing to characterize building-dust microbiomes
por: Nygaard, Anders B., et al.
Publicado: (2020)

MinION Sequencing of colorectal cancer tumour microbiomes—A comparison with amplicon-based and RNA-Sequencing
por: Taylor, William S., et al.
Publicado: (2020)

MinION™ Nanopore Sequencing of Skin Microbiome 16S and 16S-23S rRNA Gene Amplicons
por: Rozas, Miquel, et al.
Publicado: (2022)

Rapid Identification of ASFV, CSFV and FMDV from Mongolian Outbreaks with MinION Short Amplicon Sequencing
por: Bold, Dashzeveg, et al.
Publicado: (2023)

Direct Metatranscriptome RNA-seq and Multiplex RT-PCR Amplicon Sequencing on Nanopore MinION – Promising Strategies for Multiplex Identification of Viable Pathogens in Food
por: Yang, Manyun, et al.
Publicado: (2020)

Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform
por: Wen, Chongqing, et al.
Publicado: (2017)

Targeted MinION sequencing of transgenes
por: Boutigny, Anne-Laure, et al.
Publicado: (2020)

Application of MinION Amplicon Sequencing to Buccal Swab Samples for Improving Resolution and Throughput of Rumen Microbiota Analysis
por: Miura, Hiroto, et al.
Publicado: (2022)

Comparison of MiSeq, MinION, and hybrid genome sequencing for analysis of Campylobacter jejuni
por: Neal-McKinney, Jason M., et al.
Publicado: (2021)

Evaluation of Oxford Nanopore MinION RNA-Seq Performance for Human Primary Cells
por: Massaiu, Ilaria, et al.
Publicado: (2021)

A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data
por: Risse, Judith, et al.
Publicado: (2015)

First Draft Genome of the Trypanosomatid Herpetomonas muscarum ingenoplastis through MinION Oxford Nanopore Technology and Illumina Sequencing
por: d’Avila-Levy, Claudia M., et al.
Publicado: (2020)

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION(TM) sequencing
por: Cao, Minh Duc, et al.
Publicado: (2016)

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer
por: Benítez-Páez, Alfonso, et al.
Publicado: (2016)

Long-amplicon MinION-based sequencing study in a salt-contaminated twelfth century granite-built chapel
por: Pavlović, Jelena, et al.
Publicado: (2022)

Intra‐genomic rRNA gene variability of Nassellaria and Spumellaria (Rhizaria, Radiolaria) assessed by Sanger, MinION and Illumina sequencing
por: Sandin, Miguel M., et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_c9nsimsmd81tnnauemclmb32s8