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A comprehensive study on classification of COVID-19 on computed tomography with pretrained convolutional neural networks

The use of imaging data has been reported to be useful for rapid diagnosis of COVID-19. Although computed tomography (CT) scans show a variety of signs caused by the viral infection, given a large amount of images, these visual features are difficult and can take a long time to be recognized by radi...

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Autor principal: Pham, Tuan D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7547710/
https://www.ncbi.nlm.nih.gov/pubmed/33037291
http://dx.doi.org/10.1038/s41598-020-74164-z
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author Pham, Tuan D.
author_facet Pham, Tuan D.
author_sort Pham, Tuan D.
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description The use of imaging data has been reported to be useful for rapid diagnosis of COVID-19. Although computed tomography (CT) scans show a variety of signs caused by the viral infection, given a large amount of images, these visual features are difficult and can take a long time to be recognized by radiologists. Artificial intelligence methods for automated classification of COVID-19 on CT scans have been found to be very promising. However, current investigation of pretrained convolutional neural networks (CNNs) for COVID-19 diagnosis using CT data is limited. This study presents an investigation on 16 pretrained CNNs for classification of COVID-19 using a large public database of CT scans collected from COVID-19 patients and non-COVID-19 subjects. The results show that, using only 6 epochs for training, the CNNs achieved very high performance on the classification task. Among the 16 CNNs, DenseNet-201, which is the deepest net, is the best in terms of accuracy, balance between sensitivity and specificity, [Formula: see text] score, and area under curve. Furthermore, the implementation of transfer learning with the direct input of whole image slices and without the use of data augmentation provided better classification rates than the use of data augmentation. Such a finding alleviates the task of data augmentation and manual extraction of regions of interest on CT images, which are adopted by current implementation of deep-learning models for COVID-19 classification.
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spelling pubmed-75477102020-10-14 A comprehensive study on classification of COVID-19 on computed tomography with pretrained convolutional neural networks Pham, Tuan D. Sci Rep Article The use of imaging data has been reported to be useful for rapid diagnosis of COVID-19. Although computed tomography (CT) scans show a variety of signs caused by the viral infection, given a large amount of images, these visual features are difficult and can take a long time to be recognized by radiologists. Artificial intelligence methods for automated classification of COVID-19 on CT scans have been found to be very promising. However, current investigation of pretrained convolutional neural networks (CNNs) for COVID-19 diagnosis using CT data is limited. This study presents an investigation on 16 pretrained CNNs for classification of COVID-19 using a large public database of CT scans collected from COVID-19 patients and non-COVID-19 subjects. The results show that, using only 6 epochs for training, the CNNs achieved very high performance on the classification task. Among the 16 CNNs, DenseNet-201, which is the deepest net, is the best in terms of accuracy, balance between sensitivity and specificity, [Formula: see text] score, and area under curve. Furthermore, the implementation of transfer learning with the direct input of whole image slices and without the use of data augmentation provided better classification rates than the use of data augmentation. Such a finding alleviates the task of data augmentation and manual extraction of regions of interest on CT images, which are adopted by current implementation of deep-learning models for COVID-19 classification. Nature Publishing Group UK 2020-10-09 /pmc/articles/PMC7547710/ /pubmed/33037291 http://dx.doi.org/10.1038/s41598-020-74164-z Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Pham, Tuan D.
A comprehensive study on classification of COVID-19 on computed tomography with pretrained convolutional neural networks
title A comprehensive study on classification of COVID-19 on computed tomography with pretrained convolutional neural networks
title_full A comprehensive study on classification of COVID-19 on computed tomography with pretrained convolutional neural networks
title_fullStr A comprehensive study on classification of COVID-19 on computed tomography with pretrained convolutional neural networks
title_full_unstemmed A comprehensive study on classification of COVID-19 on computed tomography with pretrained convolutional neural networks
title_short A comprehensive study on classification of COVID-19 on computed tomography with pretrained convolutional neural networks
title_sort comprehensive study on classification of covid-19 on computed tomography with pretrained convolutional neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7547710/
https://www.ncbi.nlm.nih.gov/pubmed/33037291
http://dx.doi.org/10.1038/s41598-020-74164-z
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