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The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications

Sickle cell disease (SCD) is one of the most common blood disorders impacting planetary health. Over 300,000 newborns are diagnosed with SCD each year globally, with an increasing trend. The sickle cell disease ontology (SCDO) is the most comprehensive multidisciplinary SCD knowledge portal. The SCD...

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Autores principales: Nembaware, Victoria, Mazandu, Gaston K., Hotchkiss, Jade, Safari Serufuri, Jean-Michel, Kent, Jill, Kengne, Andre Pascal, Anie, Kofi, Munung, Nchangwi Syntia, Bukini, Daima, Bitoungui, Valentina Josiane Ngo, Munube, Deogratias, Chirwa, Uzima, Chunda-Liyoka, Catherine, Jonathan, Agnes, Flor-Park, Miriam V., Esoh, Kevin Kum, Jonas, Mario, Mnika, Khuthala, Oosterwyk, Chandré, Masamu, Upendo, Morrice, Jack, Uwineza, Annette, Nguweneza, Arthemon, Banda, Kambe, Nyanor, Isaac, Adjei, David Nana, Siebu, Nathan Edward, Nkanyemka, Malula, Kuona, Patience, Tayo, Bamidele O., Campbell, Andrew, Oron, Assaf P., Nnodu, Obiageli E., Painstil, Vivian, Makani, Julie, Mulder, Nicola, Wonkam, Ambroise
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Mary Ann Liebert, Inc., publishers 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7549008/
https://www.ncbi.nlm.nih.gov/pubmed/33021900
http://dx.doi.org/10.1089/omi.2020.0153
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author Nembaware, Victoria
Mazandu, Gaston K.
Hotchkiss, Jade
Safari Serufuri, Jean-Michel
Kent, Jill
Kengne, Andre Pascal
Anie, Kofi
Munung, Nchangwi Syntia
Bukini, Daima
Bitoungui, Valentina Josiane Ngo
Munube, Deogratias
Chirwa, Uzima
Chunda-Liyoka, Catherine
Jonathan, Agnes
Flor-Park, Miriam V.
Esoh, Kevin Kum
Jonas, Mario
Mnika, Khuthala
Oosterwyk, Chandré
Masamu, Upendo
Morrice, Jack
Uwineza, Annette
Nguweneza, Arthemon
Banda, Kambe
Nyanor, Isaac
Adjei, David Nana
Siebu, Nathan Edward
Nkanyemka, Malula
Kuona, Patience
Tayo, Bamidele O.
Campbell, Andrew
Oron, Assaf P.
Nnodu, Obiageli E.
Painstil, Vivian
Makani, Julie
Mulder, Nicola
Wonkam, Ambroise
author_facet Nembaware, Victoria
Mazandu, Gaston K.
Hotchkiss, Jade
Safari Serufuri, Jean-Michel
Kent, Jill
Kengne, Andre Pascal
Anie, Kofi
Munung, Nchangwi Syntia
Bukini, Daima
Bitoungui, Valentina Josiane Ngo
Munube, Deogratias
Chirwa, Uzima
Chunda-Liyoka, Catherine
Jonathan, Agnes
Flor-Park, Miriam V.
Esoh, Kevin Kum
Jonas, Mario
Mnika, Khuthala
Oosterwyk, Chandré
Masamu, Upendo
Morrice, Jack
Uwineza, Annette
Nguweneza, Arthemon
Banda, Kambe
Nyanor, Isaac
Adjei, David Nana
Siebu, Nathan Edward
Nkanyemka, Malula
Kuona, Patience
Tayo, Bamidele O.
Campbell, Andrew
Oron, Assaf P.
Nnodu, Obiageli E.
Painstil, Vivian
Makani, Julie
Mulder, Nicola
Wonkam, Ambroise
author_sort Nembaware, Victoria
collection PubMed
description Sickle cell disease (SCD) is one of the most common blood disorders impacting planetary health. Over 300,000 newborns are diagnosed with SCD each year globally, with an increasing trend. The sickle cell disease ontology (SCDO) is the most comprehensive multidisciplinary SCD knowledge portal. The SCDO was collaboratively developed by the SCDO working group, which includes experts in SCD and data standards from across the globe. This expert review presents highlights and lessons learned from the fourth SCDO workshop that marked the beginning of applications toward planetary health impact, and with an eye to empower and cultivate multisite SCD collaborative research. The workshop was organized by the Sickle Africa Data Coordinating Center (SADaCC) and attended by 44 participants from 14 countries, with 2 participants connecting remotely. Notably, from the standpoint of democratizing and innovating scientific meeting design, an SCD patient advocate also presented at the workshop, giving a broader real-life perspective on patients' aspirations, needs, and challenges. A major component of the workshop was new approaches to harness SCDO to harmonize data elements used by different studies. This was facilitated by a web-based platform onto which participants uploaded data elements from previous or ongoing SCD-relevant research studies before the workshop, making multisite collaborative research studies based on existing SCD data possible, including multisite cohort, SCD global clinical trials, and SCD community engagement approaches. Trainees presented proposals for systematic literature reviews in key SCD research areas. This expert review emphasizes potential and prospects of SCDO-enabled data standards and harmonization to facilitate large-scale global SCD collaborative initiatives. As the fields of public and global health continue to broaden toward planetary health, the SCDO is well poised to play a prominent role to decipher SCD pathophysiology further, and co-design diagnostics and therapeutics innovation in the field.
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spelling pubmed-75490082020-10-13 The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications Nembaware, Victoria Mazandu, Gaston K. Hotchkiss, Jade Safari Serufuri, Jean-Michel Kent, Jill Kengne, Andre Pascal Anie, Kofi Munung, Nchangwi Syntia Bukini, Daima Bitoungui, Valentina Josiane Ngo Munube, Deogratias Chirwa, Uzima Chunda-Liyoka, Catherine Jonathan, Agnes Flor-Park, Miriam V. Esoh, Kevin Kum Jonas, Mario Mnika, Khuthala Oosterwyk, Chandré Masamu, Upendo Morrice, Jack Uwineza, Annette Nguweneza, Arthemon Banda, Kambe Nyanor, Isaac Adjei, David Nana Siebu, Nathan Edward Nkanyemka, Malula Kuona, Patience Tayo, Bamidele O. Campbell, Andrew Oron, Assaf P. Nnodu, Obiageli E. Painstil, Vivian Makani, Julie Mulder, Nicola Wonkam, Ambroise OMICS Review Article Sickle cell disease (SCD) is one of the most common blood disorders impacting planetary health. Over 300,000 newborns are diagnosed with SCD each year globally, with an increasing trend. The sickle cell disease ontology (SCDO) is the most comprehensive multidisciplinary SCD knowledge portal. The SCDO was collaboratively developed by the SCDO working group, which includes experts in SCD and data standards from across the globe. This expert review presents highlights and lessons learned from the fourth SCDO workshop that marked the beginning of applications toward planetary health impact, and with an eye to empower and cultivate multisite SCD collaborative research. The workshop was organized by the Sickle Africa Data Coordinating Center (SADaCC) and attended by 44 participants from 14 countries, with 2 participants connecting remotely. Notably, from the standpoint of democratizing and innovating scientific meeting design, an SCD patient advocate also presented at the workshop, giving a broader real-life perspective on patients' aspirations, needs, and challenges. A major component of the workshop was new approaches to harness SCDO to harmonize data elements used by different studies. This was facilitated by a web-based platform onto which participants uploaded data elements from previous or ongoing SCD-relevant research studies before the workshop, making multisite collaborative research studies based on existing SCD data possible, including multisite cohort, SCD global clinical trials, and SCD community engagement approaches. Trainees presented proposals for systematic literature reviews in key SCD research areas. This expert review emphasizes potential and prospects of SCDO-enabled data standards and harmonization to facilitate large-scale global SCD collaborative initiatives. As the fields of public and global health continue to broaden toward planetary health, the SCDO is well poised to play a prominent role to decipher SCD pathophysiology further, and co-design diagnostics and therapeutics innovation in the field. Mary Ann Liebert, Inc., publishers 2020-10-01 2020-10-05 /pmc/articles/PMC7549008/ /pubmed/33021900 http://dx.doi.org/10.1089/omi.2020.0153 Text en © Victoria Nembaware, et al., 2020. Published by Mary Ann Liebert, Inc. This Open Access article is distributed under the terms of the Creative Commons License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the orginal work is properly credited.
spellingShingle Review Article
Nembaware, Victoria
Mazandu, Gaston K.
Hotchkiss, Jade
Safari Serufuri, Jean-Michel
Kent, Jill
Kengne, Andre Pascal
Anie, Kofi
Munung, Nchangwi Syntia
Bukini, Daima
Bitoungui, Valentina Josiane Ngo
Munube, Deogratias
Chirwa, Uzima
Chunda-Liyoka, Catherine
Jonathan, Agnes
Flor-Park, Miriam V.
Esoh, Kevin Kum
Jonas, Mario
Mnika, Khuthala
Oosterwyk, Chandré
Masamu, Upendo
Morrice, Jack
Uwineza, Annette
Nguweneza, Arthemon
Banda, Kambe
Nyanor, Isaac
Adjei, David Nana
Siebu, Nathan Edward
Nkanyemka, Malula
Kuona, Patience
Tayo, Bamidele O.
Campbell, Andrew
Oron, Assaf P.
Nnodu, Obiageli E.
Painstil, Vivian
Makani, Julie
Mulder, Nicola
Wonkam, Ambroise
The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications
title The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications
title_full The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications
title_fullStr The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications
title_full_unstemmed The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications
title_short The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications
title_sort sickle cell disease ontology: enabling collaborative research and co-designing of new planetary health applications
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7549008/
https://www.ncbi.nlm.nih.gov/pubmed/33021900
http://dx.doi.org/10.1089/omi.2020.0153
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