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Genome sequencing data for wild and cultivated bananas, plantains and abacá
We performed shotgun genome sequencing on a total of 19 different Musa genotypes including representatives of wild banana species Musa acuminata and M. balibisiana, allopolyploid bananas and plantains, Fe'i banana, pink banana (also known as hairy banana) and abacá (also known as hemp banana)....
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7549061/ https://www.ncbi.nlm.nih.gov/pubmed/33072825 http://dx.doi.org/10.1016/j.dib.2020.106341 |
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author | Sambles, Christine Venkatesan, Lakshmipriya Shittu, Olanrewaju M. Harrison, James Moore, Karen Tripathi, Leena Grant, Murray Warmington, Rachel Studholme, David J. |
author_facet | Sambles, Christine Venkatesan, Lakshmipriya Shittu, Olanrewaju M. Harrison, James Moore, Karen Tripathi, Leena Grant, Murray Warmington, Rachel Studholme, David J. |
author_sort | Sambles, Christine |
collection | PubMed |
description | We performed shotgun genome sequencing on a total of 19 different Musa genotypes including representatives of wild banana species Musa acuminata and M. balibisiana, allopolyploid bananas and plantains, Fe'i banana, pink banana (also known as hairy banana) and abacá (also known as hemp banana). We aligned sequence reads against a previously sequenced reference genome and assessed ploidy and, in the case of allopolyploids, the contributions of the A and B genomes; this provides important quality-assurance data about the taxonomic identities of the sequenced plant material. These data will be useful for phylogenetics, crop improvement, studies of the complex story of intergenomic recombination in AAB and ABB allotriploid bananas and plantains and can be integrated into resources such as the Banana Genome Hub. |
format | Online Article Text |
id | pubmed-7549061 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-75490612020-10-16 Genome sequencing data for wild and cultivated bananas, plantains and abacá Sambles, Christine Venkatesan, Lakshmipriya Shittu, Olanrewaju M. Harrison, James Moore, Karen Tripathi, Leena Grant, Murray Warmington, Rachel Studholme, David J. Data Brief Data Article We performed shotgun genome sequencing on a total of 19 different Musa genotypes including representatives of wild banana species Musa acuminata and M. balibisiana, allopolyploid bananas and plantains, Fe'i banana, pink banana (also known as hairy banana) and abacá (also known as hemp banana). We aligned sequence reads against a previously sequenced reference genome and assessed ploidy and, in the case of allopolyploids, the contributions of the A and B genomes; this provides important quality-assurance data about the taxonomic identities of the sequenced plant material. These data will be useful for phylogenetics, crop improvement, studies of the complex story of intergenomic recombination in AAB and ABB allotriploid bananas and plantains and can be integrated into resources such as the Banana Genome Hub. Elsevier 2020-09-23 /pmc/articles/PMC7549061/ /pubmed/33072825 http://dx.doi.org/10.1016/j.dib.2020.106341 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Sambles, Christine Venkatesan, Lakshmipriya Shittu, Olanrewaju M. Harrison, James Moore, Karen Tripathi, Leena Grant, Murray Warmington, Rachel Studholme, David J. Genome sequencing data for wild and cultivated bananas, plantains and abacá |
title | Genome sequencing data for wild and cultivated bananas, plantains and abacá |
title_full | Genome sequencing data for wild and cultivated bananas, plantains and abacá |
title_fullStr | Genome sequencing data for wild and cultivated bananas, plantains and abacá |
title_full_unstemmed | Genome sequencing data for wild and cultivated bananas, plantains and abacá |
title_short | Genome sequencing data for wild and cultivated bananas, plantains and abacá |
title_sort | genome sequencing data for wild and cultivated bananas, plantains and abacá |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7549061/ https://www.ncbi.nlm.nih.gov/pubmed/33072825 http://dx.doi.org/10.1016/j.dib.2020.106341 |
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