Cargando…

Analysis of rare variants of autosomal‐dominant genes in a Chinese population with sporadic Parkinson’s disease

BACKGROUND: To date, several studies have suggested that genes involved in monogenic forms of Parkinson's disease (PD) contribute to unrelated sporadic cases, but there is limited evidence in the Chinese population. METHODS: We performed a systematic analysis of 12 autosomal‐dominant PD (AD‐PD)...

Descripción completa

Detalles Bibliográficos
Autores principales: Zheng, Ran, Jin, Chong‐Yao, Chen, Ying, Ruan, Yang, Gao, Ting, Lin, Zhi‐Hao, Dong, Jia‐Xian, Yan, Ya‐Ping, Tian, Jun, Pu, Jia‐Li, Zhang, Bao‐Rong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7549569/
https://www.ncbi.nlm.nih.gov/pubmed/32794657
http://dx.doi.org/10.1002/mgg3.1449
_version_ 1783592819402735616
author Zheng, Ran
Jin, Chong‐Yao
Chen, Ying
Ruan, Yang
Gao, Ting
Lin, Zhi‐Hao
Dong, Jia‐Xian
Yan, Ya‐Ping
Tian, Jun
Pu, Jia‐Li
Zhang, Bao‐Rong
author_facet Zheng, Ran
Jin, Chong‐Yao
Chen, Ying
Ruan, Yang
Gao, Ting
Lin, Zhi‐Hao
Dong, Jia‐Xian
Yan, Ya‐Ping
Tian, Jun
Pu, Jia‐Li
Zhang, Bao‐Rong
author_sort Zheng, Ran
collection PubMed
description BACKGROUND: To date, several studies have suggested that genes involved in monogenic forms of Parkinson's disease (PD) contribute to unrelated sporadic cases, but there is limited evidence in the Chinese population. METHODS: We performed a systematic analysis of 12 autosomal‐dominant PD (AD‐PD) genes (SNCA, LRRK2, GIGYF2, VPS35, EIF4G1, DNAJC13, CHCHD2, HTRA2, NR4A2, RIC3, TMEM230, and UCHL1) using panel sequencing and database filtration in a case‐control study of a cohort of 391 Chinese sporadic PD patients and unrelated controls. We evaluated the association between candidate variants and sporadic PD using gene‐based analysis. RESULTS: Overall, 18 rare variants were discovered in 18.8% (36/191) of the index patients. In addition to previously reported pathogenic mutations (LRRK2 p.Arg1441His and p.Ala419Val), another four unknown variants were found in LRRK2, which also contribute to PD risk (p = 0.002; odds ratio (OR) = 7.83, 95% confidence intervals (CI) = 1.76–34.93). The cumulative frequency of undetermined rare variants was significantly higher in PD patients (14.1%) than in controls (3.5%) (p = 0.0002; OR=4.54, 95% CI = 1.93‐10.69). CONCLUSION: Our results confirm the strong impact of LRRK2 on the risk of sporadic PD, and also provide considerable evidence of the existence of additional undetermined rare variants in AD‐PD genes that contribute to the genetic etiology of sporadic PD in a Chinese cohort.
format Online
Article
Text
id pubmed-7549569
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-75495692020-10-19 Analysis of rare variants of autosomal‐dominant genes in a Chinese population with sporadic Parkinson’s disease Zheng, Ran Jin, Chong‐Yao Chen, Ying Ruan, Yang Gao, Ting Lin, Zhi‐Hao Dong, Jia‐Xian Yan, Ya‐Ping Tian, Jun Pu, Jia‐Li Zhang, Bao‐Rong Mol Genet Genomic Med Original Articles BACKGROUND: To date, several studies have suggested that genes involved in monogenic forms of Parkinson's disease (PD) contribute to unrelated sporadic cases, but there is limited evidence in the Chinese population. METHODS: We performed a systematic analysis of 12 autosomal‐dominant PD (AD‐PD) genes (SNCA, LRRK2, GIGYF2, VPS35, EIF4G1, DNAJC13, CHCHD2, HTRA2, NR4A2, RIC3, TMEM230, and UCHL1) using panel sequencing and database filtration in a case‐control study of a cohort of 391 Chinese sporadic PD patients and unrelated controls. We evaluated the association between candidate variants and sporadic PD using gene‐based analysis. RESULTS: Overall, 18 rare variants were discovered in 18.8% (36/191) of the index patients. In addition to previously reported pathogenic mutations (LRRK2 p.Arg1441His and p.Ala419Val), another four unknown variants were found in LRRK2, which also contribute to PD risk (p = 0.002; odds ratio (OR) = 7.83, 95% confidence intervals (CI) = 1.76–34.93). The cumulative frequency of undetermined rare variants was significantly higher in PD patients (14.1%) than in controls (3.5%) (p = 0.0002; OR=4.54, 95% CI = 1.93‐10.69). CONCLUSION: Our results confirm the strong impact of LRRK2 on the risk of sporadic PD, and also provide considerable evidence of the existence of additional undetermined rare variants in AD‐PD genes that contribute to the genetic etiology of sporadic PD in a Chinese cohort. John Wiley and Sons Inc. 2020-08-14 /pmc/articles/PMC7549569/ /pubmed/32794657 http://dx.doi.org/10.1002/mgg3.1449 Text en © 2020 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Zheng, Ran
Jin, Chong‐Yao
Chen, Ying
Ruan, Yang
Gao, Ting
Lin, Zhi‐Hao
Dong, Jia‐Xian
Yan, Ya‐Ping
Tian, Jun
Pu, Jia‐Li
Zhang, Bao‐Rong
Analysis of rare variants of autosomal‐dominant genes in a Chinese population with sporadic Parkinson’s disease
title Analysis of rare variants of autosomal‐dominant genes in a Chinese population with sporadic Parkinson’s disease
title_full Analysis of rare variants of autosomal‐dominant genes in a Chinese population with sporadic Parkinson’s disease
title_fullStr Analysis of rare variants of autosomal‐dominant genes in a Chinese population with sporadic Parkinson’s disease
title_full_unstemmed Analysis of rare variants of autosomal‐dominant genes in a Chinese population with sporadic Parkinson’s disease
title_short Analysis of rare variants of autosomal‐dominant genes in a Chinese population with sporadic Parkinson’s disease
title_sort analysis of rare variants of autosomal‐dominant genes in a chinese population with sporadic parkinson’s disease
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7549569/
https://www.ncbi.nlm.nih.gov/pubmed/32794657
http://dx.doi.org/10.1002/mgg3.1449
work_keys_str_mv AT zhengran analysisofrarevariantsofautosomaldominantgenesinachinesepopulationwithsporadicparkinsonsdisease
AT jinchongyao analysisofrarevariantsofautosomaldominantgenesinachinesepopulationwithsporadicparkinsonsdisease
AT chenying analysisofrarevariantsofautosomaldominantgenesinachinesepopulationwithsporadicparkinsonsdisease
AT ruanyang analysisofrarevariantsofautosomaldominantgenesinachinesepopulationwithsporadicparkinsonsdisease
AT gaoting analysisofrarevariantsofautosomaldominantgenesinachinesepopulationwithsporadicparkinsonsdisease
AT linzhihao analysisofrarevariantsofautosomaldominantgenesinachinesepopulationwithsporadicparkinsonsdisease
AT dongjiaxian analysisofrarevariantsofautosomaldominantgenesinachinesepopulationwithsporadicparkinsonsdisease
AT yanyaping analysisofrarevariantsofautosomaldominantgenesinachinesepopulationwithsporadicparkinsonsdisease
AT tianjun analysisofrarevariantsofautosomaldominantgenesinachinesepopulationwithsporadicparkinsonsdisease
AT pujiali analysisofrarevariantsofautosomaldominantgenesinachinesepopulationwithsporadicparkinsonsdisease
AT zhangbaorong analysisofrarevariantsofautosomaldominantgenesinachinesepopulationwithsporadicparkinsonsdisease