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A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease
BACKGROUND: Coronary atherosclerotic heart disease (CHD) is the most common cardiovascular disease and has become a leading cause of death globally. Various molecular typing methods are available for the diagnosis and treatment of tumors. However, molecular typing results are not routinely used for...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7549572/ https://www.ncbi.nlm.nih.gov/pubmed/32743916 http://dx.doi.org/10.1002/mgg3.1415 |
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author | Li, Yuewei Lin, Maohuan Wang, Kangjie Zhan, YaQing Gu, Wenli Gao, Guanghao Huang, Yuna Chen, Yangxin Huang, Tucheng Wang, Jingfeng |
author_facet | Li, Yuewei Lin, Maohuan Wang, Kangjie Zhan, YaQing Gu, Wenli Gao, Guanghao Huang, Yuna Chen, Yangxin Huang, Tucheng Wang, Jingfeng |
author_sort | Li, Yuewei |
collection | PubMed |
description | BACKGROUND: Coronary atherosclerotic heart disease (CHD) is the most common cardiovascular disease and has become a leading cause of death globally. Various molecular typing methods are available for the diagnosis and treatment of tumors. However, molecular typing results are not routinely used for CHD. METHODS AND RESULTS: Aiming to uncover the underlying molecular features of different types of CHD, we screened the differentially expressed genes (DEGs) associated with CHD based on the Gene Expression Omnibus (GEO) data and expanded those with the NCBI‐gene and OMIM databases to finally obtain 2021 DEGs. The weighted gene co‐expression analysis (WGCNA) was performed on the candidate genes, and six distinctive WGCNA modules were identified, two of which were associated with CHD. Moreover, DEGs were mined as key genes for co‐expression based on the module network relationship. Furthermore, the differentially expressed miRNAs in CHD and interactions in the database were mined in the GEO data set to build a multifactor regulatory network of key genes for co‐expression. Based on the network, the CHD samples were further classified into five clusters and we defined FTH1, HCAR3, RGS2, S100A9, and TYROBP as the top genes of the five subgroups. Finally, the mRNA levels of FTH1, S100A9, and TYROBP were found to be significantly increased, while the expression of HCAR3 was decreased in the blood of CHD patients. We did not detect measurable levels of RGS2. CONCLUSION: The screened core clusters of genes may be a target for the diagnosis and treatment of CHD as a molecular typing module. |
format | Online Article Text |
id | pubmed-7549572 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-75495722020-10-19 A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease Li, Yuewei Lin, Maohuan Wang, Kangjie Zhan, YaQing Gu, Wenli Gao, Guanghao Huang, Yuna Chen, Yangxin Huang, Tucheng Wang, Jingfeng Mol Genet Genomic Med Original Articles BACKGROUND: Coronary atherosclerotic heart disease (CHD) is the most common cardiovascular disease and has become a leading cause of death globally. Various molecular typing methods are available for the diagnosis and treatment of tumors. However, molecular typing results are not routinely used for CHD. METHODS AND RESULTS: Aiming to uncover the underlying molecular features of different types of CHD, we screened the differentially expressed genes (DEGs) associated with CHD based on the Gene Expression Omnibus (GEO) data and expanded those with the NCBI‐gene and OMIM databases to finally obtain 2021 DEGs. The weighted gene co‐expression analysis (WGCNA) was performed on the candidate genes, and six distinctive WGCNA modules were identified, two of which were associated with CHD. Moreover, DEGs were mined as key genes for co‐expression based on the module network relationship. Furthermore, the differentially expressed miRNAs in CHD and interactions in the database were mined in the GEO data set to build a multifactor regulatory network of key genes for co‐expression. Based on the network, the CHD samples were further classified into five clusters and we defined FTH1, HCAR3, RGS2, S100A9, and TYROBP as the top genes of the five subgroups. Finally, the mRNA levels of FTH1, S100A9, and TYROBP were found to be significantly increased, while the expression of HCAR3 was decreased in the blood of CHD patients. We did not detect measurable levels of RGS2. CONCLUSION: The screened core clusters of genes may be a target for the diagnosis and treatment of CHD as a molecular typing module. John Wiley and Sons Inc. 2020-08-02 /pmc/articles/PMC7549572/ /pubmed/32743916 http://dx.doi.org/10.1002/mgg3.1415 Text en © 2020 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Original Articles Li, Yuewei Lin, Maohuan Wang, Kangjie Zhan, YaQing Gu, Wenli Gao, Guanghao Huang, Yuna Chen, Yangxin Huang, Tucheng Wang, Jingfeng A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease |
title | A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease |
title_full | A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease |
title_fullStr | A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease |
title_full_unstemmed | A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease |
title_short | A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease |
title_sort | module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7549572/ https://www.ncbi.nlm.nih.gov/pubmed/32743916 http://dx.doi.org/10.1002/mgg3.1415 |
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