Cargando…

A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease

BACKGROUND: Coronary atherosclerotic heart disease (CHD) is the most common cardiovascular disease and has become a leading cause of death globally. Various molecular typing methods are available for the diagnosis and treatment of tumors. However, molecular typing results are not routinely used for...

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Yuewei, Lin, Maohuan, Wang, Kangjie, Zhan, YaQing, Gu, Wenli, Gao, Guanghao, Huang, Yuna, Chen, Yangxin, Huang, Tucheng, Wang, Jingfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7549572/
https://www.ncbi.nlm.nih.gov/pubmed/32743916
http://dx.doi.org/10.1002/mgg3.1415
_version_ 1783592820116815872
author Li, Yuewei
Lin, Maohuan
Wang, Kangjie
Zhan, YaQing
Gu, Wenli
Gao, Guanghao
Huang, Yuna
Chen, Yangxin
Huang, Tucheng
Wang, Jingfeng
author_facet Li, Yuewei
Lin, Maohuan
Wang, Kangjie
Zhan, YaQing
Gu, Wenli
Gao, Guanghao
Huang, Yuna
Chen, Yangxin
Huang, Tucheng
Wang, Jingfeng
author_sort Li, Yuewei
collection PubMed
description BACKGROUND: Coronary atherosclerotic heart disease (CHD) is the most common cardiovascular disease and has become a leading cause of death globally. Various molecular typing methods are available for the diagnosis and treatment of tumors. However, molecular typing results are not routinely used for CHD. METHODS AND RESULTS: Aiming to uncover the underlying molecular features of different types of CHD, we screened the differentially expressed genes (DEGs) associated with CHD based on the Gene Expression Omnibus (GEO) data and expanded those with the NCBI‐gene and OMIM databases to finally obtain 2021 DEGs. The weighted gene co‐expression analysis (WGCNA) was performed on the candidate genes, and six distinctive WGCNA modules were identified, two of which were associated with CHD. Moreover, DEGs were mined as key genes for co‐expression based on the module network relationship. Furthermore, the differentially expressed miRNAs in CHD and interactions in the database were mined in the GEO data set to build a multifactor regulatory network of key genes for co‐expression. Based on the network, the CHD samples were further classified into five clusters and we defined FTH1, HCAR3, RGS2, S100A9, and TYROBP as the top genes of the five subgroups. Finally, the mRNA levels of FTH1, S100A9, and TYROBP were found to be significantly increased, while the expression of HCAR3 was decreased in the blood of CHD patients. We did not detect measurable levels of RGS2. CONCLUSION: The screened core clusters of genes may be a target for the diagnosis and treatment of CHD as a molecular typing module.
format Online
Article
Text
id pubmed-7549572
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-75495722020-10-19 A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease Li, Yuewei Lin, Maohuan Wang, Kangjie Zhan, YaQing Gu, Wenli Gao, Guanghao Huang, Yuna Chen, Yangxin Huang, Tucheng Wang, Jingfeng Mol Genet Genomic Med Original Articles BACKGROUND: Coronary atherosclerotic heart disease (CHD) is the most common cardiovascular disease and has become a leading cause of death globally. Various molecular typing methods are available for the diagnosis and treatment of tumors. However, molecular typing results are not routinely used for CHD. METHODS AND RESULTS: Aiming to uncover the underlying molecular features of different types of CHD, we screened the differentially expressed genes (DEGs) associated with CHD based on the Gene Expression Omnibus (GEO) data and expanded those with the NCBI‐gene and OMIM databases to finally obtain 2021 DEGs. The weighted gene co‐expression analysis (WGCNA) was performed on the candidate genes, and six distinctive WGCNA modules were identified, two of which were associated with CHD. Moreover, DEGs were mined as key genes for co‐expression based on the module network relationship. Furthermore, the differentially expressed miRNAs in CHD and interactions in the database were mined in the GEO data set to build a multifactor regulatory network of key genes for co‐expression. Based on the network, the CHD samples were further classified into five clusters and we defined FTH1, HCAR3, RGS2, S100A9, and TYROBP as the top genes of the five subgroups. Finally, the mRNA levels of FTH1, S100A9, and TYROBP were found to be significantly increased, while the expression of HCAR3 was decreased in the blood of CHD patients. We did not detect measurable levels of RGS2. CONCLUSION: The screened core clusters of genes may be a target for the diagnosis and treatment of CHD as a molecular typing module. John Wiley and Sons Inc. 2020-08-02 /pmc/articles/PMC7549572/ /pubmed/32743916 http://dx.doi.org/10.1002/mgg3.1415 Text en © 2020 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Original Articles
Li, Yuewei
Lin, Maohuan
Wang, Kangjie
Zhan, YaQing
Gu, Wenli
Gao, Guanghao
Huang, Yuna
Chen, Yangxin
Huang, Tucheng
Wang, Jingfeng
A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease
title A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease
title_full A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease
title_fullStr A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease
title_full_unstemmed A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease
title_short A module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease
title_sort module of multifactor‐mediated dysfunction guides the molecular typing of coronary heart disease
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7549572/
https://www.ncbi.nlm.nih.gov/pubmed/32743916
http://dx.doi.org/10.1002/mgg3.1415
work_keys_str_mv AT liyuewei amoduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT linmaohuan amoduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT wangkangjie amoduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT zhanyaqing amoduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT guwenli amoduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT gaoguanghao amoduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT huangyuna amoduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT chenyangxin amoduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT huangtucheng amoduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT wangjingfeng amoduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT liyuewei moduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT linmaohuan moduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT wangkangjie moduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT zhanyaqing moduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT guwenli moduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT gaoguanghao moduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT huangyuna moduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT chenyangxin moduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT huangtucheng moduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease
AT wangjingfeng moduleofmultifactormediateddysfunctionguidesthemoleculartypingofcoronaryheartdisease