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High-throughput mutagenesis reveals unique structural features of human ADAR1
Adenosine Deaminases that act on RNA (ADARs) are enzymes that catalyze adenosine to inosine conversion in dsRNA, a common form of RNA editing. Mutations in the human ADAR1 gene are known to cause disease and recent studies have identified ADAR1 as a potential therapeutic target for a subset of cance...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7550611/ https://www.ncbi.nlm.nih.gov/pubmed/33046702 http://dx.doi.org/10.1038/s41467-020-18862-2 |
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author | Park, SeHee Doherty, Erin E. Xie, Yixuan Padyana, Anil K. Fang, Fang Zhang, Yue Karki, Agya Lebrilla, Carlito B. Siegel, Justin B. Beal, Peter A. |
author_facet | Park, SeHee Doherty, Erin E. Xie, Yixuan Padyana, Anil K. Fang, Fang Zhang, Yue Karki, Agya Lebrilla, Carlito B. Siegel, Justin B. Beal, Peter A. |
author_sort | Park, SeHee |
collection | PubMed |
description | Adenosine Deaminases that act on RNA (ADARs) are enzymes that catalyze adenosine to inosine conversion in dsRNA, a common form of RNA editing. Mutations in the human ADAR1 gene are known to cause disease and recent studies have identified ADAR1 as a potential therapeutic target for a subset of cancers. However, efforts to define the mechanistic effects for disease associated ADAR1 mutations and the rational design of ADAR1 inhibitors are limited by a lack of structural information. Here, we describe the combination of high throughput mutagenesis screening studies, biochemical characterization and Rosetta-based structure modeling to identify unique features of ADAR1. Importantly, these studies reveal a previously unknown zinc-binding site on the surface of the ADAR1 deaminase domain which is important for ADAR1 editing activity. Furthermore, we present structural models that explain known properties of this enzyme and make predictions about the role of specific residues in a surface loop unique to ADAR1. |
format | Online Article Text |
id | pubmed-7550611 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-75506112020-10-19 High-throughput mutagenesis reveals unique structural features of human ADAR1 Park, SeHee Doherty, Erin E. Xie, Yixuan Padyana, Anil K. Fang, Fang Zhang, Yue Karki, Agya Lebrilla, Carlito B. Siegel, Justin B. Beal, Peter A. Nat Commun Article Adenosine Deaminases that act on RNA (ADARs) are enzymes that catalyze adenosine to inosine conversion in dsRNA, a common form of RNA editing. Mutations in the human ADAR1 gene are known to cause disease and recent studies have identified ADAR1 as a potential therapeutic target for a subset of cancers. However, efforts to define the mechanistic effects for disease associated ADAR1 mutations and the rational design of ADAR1 inhibitors are limited by a lack of structural information. Here, we describe the combination of high throughput mutagenesis screening studies, biochemical characterization and Rosetta-based structure modeling to identify unique features of ADAR1. Importantly, these studies reveal a previously unknown zinc-binding site on the surface of the ADAR1 deaminase domain which is important for ADAR1 editing activity. Furthermore, we present structural models that explain known properties of this enzyme and make predictions about the role of specific residues in a surface loop unique to ADAR1. Nature Publishing Group UK 2020-10-12 /pmc/articles/PMC7550611/ /pubmed/33046702 http://dx.doi.org/10.1038/s41467-020-18862-2 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Park, SeHee Doherty, Erin E. Xie, Yixuan Padyana, Anil K. Fang, Fang Zhang, Yue Karki, Agya Lebrilla, Carlito B. Siegel, Justin B. Beal, Peter A. High-throughput mutagenesis reveals unique structural features of human ADAR1 |
title | High-throughput mutagenesis reveals unique structural features of human ADAR1 |
title_full | High-throughput mutagenesis reveals unique structural features of human ADAR1 |
title_fullStr | High-throughput mutagenesis reveals unique structural features of human ADAR1 |
title_full_unstemmed | High-throughput mutagenesis reveals unique structural features of human ADAR1 |
title_short | High-throughput mutagenesis reveals unique structural features of human ADAR1 |
title_sort | high-throughput mutagenesis reveals unique structural features of human adar1 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7550611/ https://www.ncbi.nlm.nih.gov/pubmed/33046702 http://dx.doi.org/10.1038/s41467-020-18862-2 |
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