Cargando…

High-throughput mutagenesis reveals unique structural features of human ADAR1

Adenosine Deaminases that act on RNA (ADARs) are enzymes that catalyze adenosine to inosine conversion in dsRNA, a common form of RNA editing. Mutations in the human ADAR1 gene are known to cause disease and recent studies have identified ADAR1 as a potential therapeutic target for a subset of cance...

Descripción completa

Detalles Bibliográficos
Autores principales: Park, SeHee, Doherty, Erin E., Xie, Yixuan, Padyana, Anil K., Fang, Fang, Zhang, Yue, Karki, Agya, Lebrilla, Carlito B., Siegel, Justin B., Beal, Peter A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7550611/
https://www.ncbi.nlm.nih.gov/pubmed/33046702
http://dx.doi.org/10.1038/s41467-020-18862-2
_version_ 1783593001441820672
author Park, SeHee
Doherty, Erin E.
Xie, Yixuan
Padyana, Anil K.
Fang, Fang
Zhang, Yue
Karki, Agya
Lebrilla, Carlito B.
Siegel, Justin B.
Beal, Peter A.
author_facet Park, SeHee
Doherty, Erin E.
Xie, Yixuan
Padyana, Anil K.
Fang, Fang
Zhang, Yue
Karki, Agya
Lebrilla, Carlito B.
Siegel, Justin B.
Beal, Peter A.
author_sort Park, SeHee
collection PubMed
description Adenosine Deaminases that act on RNA (ADARs) are enzymes that catalyze adenosine to inosine conversion in dsRNA, a common form of RNA editing. Mutations in the human ADAR1 gene are known to cause disease and recent studies have identified ADAR1 as a potential therapeutic target for a subset of cancers. However, efforts to define the mechanistic effects for disease associated ADAR1 mutations and the rational design of ADAR1 inhibitors are limited by a lack of structural information. Here, we describe the combination of high throughput mutagenesis screening studies, biochemical characterization and Rosetta-based structure modeling to identify unique features of ADAR1. Importantly, these studies reveal a previously unknown zinc-binding site on the surface of the ADAR1 deaminase domain which is important for ADAR1 editing activity. Furthermore, we present structural models that explain known properties of this enzyme and make predictions about the role of specific residues in a surface loop unique to ADAR1.
format Online
Article
Text
id pubmed-7550611
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-75506112020-10-19 High-throughput mutagenesis reveals unique structural features of human ADAR1 Park, SeHee Doherty, Erin E. Xie, Yixuan Padyana, Anil K. Fang, Fang Zhang, Yue Karki, Agya Lebrilla, Carlito B. Siegel, Justin B. Beal, Peter A. Nat Commun Article Adenosine Deaminases that act on RNA (ADARs) are enzymes that catalyze adenosine to inosine conversion in dsRNA, a common form of RNA editing. Mutations in the human ADAR1 gene are known to cause disease and recent studies have identified ADAR1 as a potential therapeutic target for a subset of cancers. However, efforts to define the mechanistic effects for disease associated ADAR1 mutations and the rational design of ADAR1 inhibitors are limited by a lack of structural information. Here, we describe the combination of high throughput mutagenesis screening studies, biochemical characterization and Rosetta-based structure modeling to identify unique features of ADAR1. Importantly, these studies reveal a previously unknown zinc-binding site on the surface of the ADAR1 deaminase domain which is important for ADAR1 editing activity. Furthermore, we present structural models that explain known properties of this enzyme and make predictions about the role of specific residues in a surface loop unique to ADAR1. Nature Publishing Group UK 2020-10-12 /pmc/articles/PMC7550611/ /pubmed/33046702 http://dx.doi.org/10.1038/s41467-020-18862-2 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Park, SeHee
Doherty, Erin E.
Xie, Yixuan
Padyana, Anil K.
Fang, Fang
Zhang, Yue
Karki, Agya
Lebrilla, Carlito B.
Siegel, Justin B.
Beal, Peter A.
High-throughput mutagenesis reveals unique structural features of human ADAR1
title High-throughput mutagenesis reveals unique structural features of human ADAR1
title_full High-throughput mutagenesis reveals unique structural features of human ADAR1
title_fullStr High-throughput mutagenesis reveals unique structural features of human ADAR1
title_full_unstemmed High-throughput mutagenesis reveals unique structural features of human ADAR1
title_short High-throughput mutagenesis reveals unique structural features of human ADAR1
title_sort high-throughput mutagenesis reveals unique structural features of human adar1
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7550611/
https://www.ncbi.nlm.nih.gov/pubmed/33046702
http://dx.doi.org/10.1038/s41467-020-18862-2
work_keys_str_mv AT parksehee highthroughputmutagenesisrevealsuniquestructuralfeaturesofhumanadar1
AT dohertyerine highthroughputmutagenesisrevealsuniquestructuralfeaturesofhumanadar1
AT xieyixuan highthroughputmutagenesisrevealsuniquestructuralfeaturesofhumanadar1
AT padyanaanilk highthroughputmutagenesisrevealsuniquestructuralfeaturesofhumanadar1
AT fangfang highthroughputmutagenesisrevealsuniquestructuralfeaturesofhumanadar1
AT zhangyue highthroughputmutagenesisrevealsuniquestructuralfeaturesofhumanadar1
AT karkiagya highthroughputmutagenesisrevealsuniquestructuralfeaturesofhumanadar1
AT lebrillacarlitob highthroughputmutagenesisrevealsuniquestructuralfeaturesofhumanadar1
AT siegeljustinb highthroughputmutagenesisrevealsuniquestructuralfeaturesofhumanadar1
AT bealpetera highthroughputmutagenesisrevealsuniquestructuralfeaturesofhumanadar1