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Automatic Incident Triage in Radiation Oncology Incident Learning System

The Radiotherapy Incident Reporting and Analysis System (RIRAS) receives incident reports from Radiation Oncology facilities across the US Veterans Health Affairs (VHA) enterprise and Virginia Commonwealth University (VCU). In this work, we propose a computational pipeline for analysis of radiation...

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Autores principales: Syed, Khajamoinuddin, Sleeman, William, Hagan, Michael, Palta, Jatinder, Kapoor, Rishabh, Ghosh, Preetam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7551126/
https://www.ncbi.nlm.nih.gov/pubmed/32823971
http://dx.doi.org/10.3390/healthcare8030272
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author Syed, Khajamoinuddin
Sleeman, William
Hagan, Michael
Palta, Jatinder
Kapoor, Rishabh
Ghosh, Preetam
author_facet Syed, Khajamoinuddin
Sleeman, William
Hagan, Michael
Palta, Jatinder
Kapoor, Rishabh
Ghosh, Preetam
author_sort Syed, Khajamoinuddin
collection PubMed
description The Radiotherapy Incident Reporting and Analysis System (RIRAS) receives incident reports from Radiation Oncology facilities across the US Veterans Health Affairs (VHA) enterprise and Virginia Commonwealth University (VCU). In this work, we propose a computational pipeline for analysis of radiation oncology incident reports. Our pipeline uses machine learning (ML) and natural language processing (NLP) based methods to predict the severity of the incidents reported in the RIRAS platform using the textual description of the reported incidents. These incidents in RIRAS are reviewed by a radiation oncology subject matter expert (SME), who initially triages some incidents based on the salient elements in the incident report. To automate the triage process, we used the data from the VHA treatment centers and the VCU radiation oncology department. We used NLP combined with traditional ML algorithms, including support vector machine (SVM) with linear kernel, and compared it against the transfer learning approach with the universal language model fine-tuning (ULMFiT) algorithm. In RIRAS, severities are divided into four categories; A, B, C, and D, with A being the most severe to D being the least. In this work, we built models to predict High (A & B) vs. Low (C & D) severity instead of all the four categories. Models were evaluated with macro-averaged precision, recall, and F1-Score. The Traditional ML machine learning (SVM-linear) approach did well on the VHA dataset with 0.78 F1-Score but performed poorly on the VCU dataset with 0.5 F1-Score. The transfer learning approach did well on both datasets with 0.81 F1-Score on VHA dataset and 0.68 F1-Score on the VCU dataset. Overall, our methods show promise in automating the triage and severity determination process from radiotherapy incident reports.
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spelling pubmed-75511262020-10-16 Automatic Incident Triage in Radiation Oncology Incident Learning System Syed, Khajamoinuddin Sleeman, William Hagan, Michael Palta, Jatinder Kapoor, Rishabh Ghosh, Preetam Healthcare (Basel) Article The Radiotherapy Incident Reporting and Analysis System (RIRAS) receives incident reports from Radiation Oncology facilities across the US Veterans Health Affairs (VHA) enterprise and Virginia Commonwealth University (VCU). In this work, we propose a computational pipeline for analysis of radiation oncology incident reports. Our pipeline uses machine learning (ML) and natural language processing (NLP) based methods to predict the severity of the incidents reported in the RIRAS platform using the textual description of the reported incidents. These incidents in RIRAS are reviewed by a radiation oncology subject matter expert (SME), who initially triages some incidents based on the salient elements in the incident report. To automate the triage process, we used the data from the VHA treatment centers and the VCU radiation oncology department. We used NLP combined with traditional ML algorithms, including support vector machine (SVM) with linear kernel, and compared it against the transfer learning approach with the universal language model fine-tuning (ULMFiT) algorithm. In RIRAS, severities are divided into four categories; A, B, C, and D, with A being the most severe to D being the least. In this work, we built models to predict High (A & B) vs. Low (C & D) severity instead of all the four categories. Models were evaluated with macro-averaged precision, recall, and F1-Score. The Traditional ML machine learning (SVM-linear) approach did well on the VHA dataset with 0.78 F1-Score but performed poorly on the VCU dataset with 0.5 F1-Score. The transfer learning approach did well on both datasets with 0.81 F1-Score on VHA dataset and 0.68 F1-Score on the VCU dataset. Overall, our methods show promise in automating the triage and severity determination process from radiotherapy incident reports. MDPI 2020-08-14 /pmc/articles/PMC7551126/ /pubmed/32823971 http://dx.doi.org/10.3390/healthcare8030272 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Syed, Khajamoinuddin
Sleeman, William
Hagan, Michael
Palta, Jatinder
Kapoor, Rishabh
Ghosh, Preetam
Automatic Incident Triage in Radiation Oncology Incident Learning System
title Automatic Incident Triage in Radiation Oncology Incident Learning System
title_full Automatic Incident Triage in Radiation Oncology Incident Learning System
title_fullStr Automatic Incident Triage in Radiation Oncology Incident Learning System
title_full_unstemmed Automatic Incident Triage in Radiation Oncology Incident Learning System
title_short Automatic Incident Triage in Radiation Oncology Incident Learning System
title_sort automatic incident triage in radiation oncology incident learning system
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7551126/
https://www.ncbi.nlm.nih.gov/pubmed/32823971
http://dx.doi.org/10.3390/healthcare8030272
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