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An efficient method for the construction of artificial, concatemeric DNA, RNA and proteins with genetically programmed functions, using a novel, vector-enzymatic DNA fragment amplification-expression technology

De novo designed bioactive molecules, such as DNA, RNA and peptides, are utilized in increasingly diverse scientific, industrial and biomedical applications. Concatemerization of designed DNA, RNA and peptides may improve their stability, bioactivity and allow for gradual release of the bioactive mo...

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Autores principales: Skowron, Piotr M., Krawczun, Natalia, Żebrowska, Joanna, Krefft, Daria, Żołnierkiewicz, Olga, Bielawa, Marta, Jeżewska-Frąckowiak, Joanna, Janus, Łukasz, Witkowska, Małgorzata, Palczewska, Małgorzata, Zylicz-Stachula, Agnieszka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7551362/
https://www.ncbi.nlm.nih.gov/pubmed/33083239
http://dx.doi.org/10.1016/j.mex.2020.101070
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author Skowron, Piotr M.
Krawczun, Natalia
Żebrowska, Joanna
Krefft, Daria
Żołnierkiewicz, Olga
Bielawa, Marta
Jeżewska-Frąckowiak, Joanna
Janus, Łukasz
Witkowska, Małgorzata
Palczewska, Małgorzata
Zylicz-Stachula, Agnieszka
author_facet Skowron, Piotr M.
Krawczun, Natalia
Żebrowska, Joanna
Krefft, Daria
Żołnierkiewicz, Olga
Bielawa, Marta
Jeżewska-Frąckowiak, Joanna
Janus, Łukasz
Witkowska, Małgorzata
Palczewska, Małgorzata
Zylicz-Stachula, Agnieszka
author_sort Skowron, Piotr M.
collection PubMed
description De novo designed bioactive molecules, such as DNA, RNA and peptides, are utilized in increasingly diverse scientific, industrial and biomedical applications. Concatemerization of designed DNA, RNA and peptides may improve their stability, bioactivity and allow for gradual release of the bioactive molecule at the intended destination. In this context, we developed a new method enabling the formation of DNA concatemers for the production of artificial, repetitive genes, encoding concatemeric RNAs and proteins of any nucleotide and amino-acid sequence. The technology recruits the Type IIS SapI restriction endonuclease (REase) for assembling DNA fragments in an ordered head-to-tail-orientation. Alternatively, other commercially available SapI isoschizomers can be used: LguI and thermostable BspQI. Four series of DNA vectors dedicated to the expression of newly formed, concatemeric open reading frames (ORFs), were designed and constructed to meet the technology needs. • Vector-enzymatic DNA fragment amplification technology. • Construction of DNA concatemers many times longer than those available with the use of current de novo gene synthesis methods. • Biosynthesis of protein tandem repeats with programmable function never seen in nature.
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spelling pubmed-75513622020-10-19 An efficient method for the construction of artificial, concatemeric DNA, RNA and proteins with genetically programmed functions, using a novel, vector-enzymatic DNA fragment amplification-expression technology Skowron, Piotr M. Krawczun, Natalia Żebrowska, Joanna Krefft, Daria Żołnierkiewicz, Olga Bielawa, Marta Jeżewska-Frąckowiak, Joanna Janus, Łukasz Witkowska, Małgorzata Palczewska, Małgorzata Zylicz-Stachula, Agnieszka MethodsX Method Article De novo designed bioactive molecules, such as DNA, RNA and peptides, are utilized in increasingly diverse scientific, industrial and biomedical applications. Concatemerization of designed DNA, RNA and peptides may improve their stability, bioactivity and allow for gradual release of the bioactive molecule at the intended destination. In this context, we developed a new method enabling the formation of DNA concatemers for the production of artificial, repetitive genes, encoding concatemeric RNAs and proteins of any nucleotide and amino-acid sequence. The technology recruits the Type IIS SapI restriction endonuclease (REase) for assembling DNA fragments in an ordered head-to-tail-orientation. Alternatively, other commercially available SapI isoschizomers can be used: LguI and thermostable BspQI. Four series of DNA vectors dedicated to the expression of newly formed, concatemeric open reading frames (ORFs), were designed and constructed to meet the technology needs. • Vector-enzymatic DNA fragment amplification technology. • Construction of DNA concatemers many times longer than those available with the use of current de novo gene synthesis methods. • Biosynthesis of protein tandem repeats with programmable function never seen in nature. Elsevier 2020-09-21 /pmc/articles/PMC7551362/ /pubmed/33083239 http://dx.doi.org/10.1016/j.mex.2020.101070 Text en © 2020 The Authors. Published by Elsevier B.V. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Method Article
Skowron, Piotr M.
Krawczun, Natalia
Żebrowska, Joanna
Krefft, Daria
Żołnierkiewicz, Olga
Bielawa, Marta
Jeżewska-Frąckowiak, Joanna
Janus, Łukasz
Witkowska, Małgorzata
Palczewska, Małgorzata
Zylicz-Stachula, Agnieszka
An efficient method for the construction of artificial, concatemeric DNA, RNA and proteins with genetically programmed functions, using a novel, vector-enzymatic DNA fragment amplification-expression technology
title An efficient method for the construction of artificial, concatemeric DNA, RNA and proteins with genetically programmed functions, using a novel, vector-enzymatic DNA fragment amplification-expression technology
title_full An efficient method for the construction of artificial, concatemeric DNA, RNA and proteins with genetically programmed functions, using a novel, vector-enzymatic DNA fragment amplification-expression technology
title_fullStr An efficient method for the construction of artificial, concatemeric DNA, RNA and proteins with genetically programmed functions, using a novel, vector-enzymatic DNA fragment amplification-expression technology
title_full_unstemmed An efficient method for the construction of artificial, concatemeric DNA, RNA and proteins with genetically programmed functions, using a novel, vector-enzymatic DNA fragment amplification-expression technology
title_short An efficient method for the construction of artificial, concatemeric DNA, RNA and proteins with genetically programmed functions, using a novel, vector-enzymatic DNA fragment amplification-expression technology
title_sort efficient method for the construction of artificial, concatemeric dna, rna and proteins with genetically programmed functions, using a novel, vector-enzymatic dna fragment amplification-expression technology
topic Method Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7551362/
https://www.ncbi.nlm.nih.gov/pubmed/33083239
http://dx.doi.org/10.1016/j.mex.2020.101070
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