Cargando…

A bacterial size law revealed by a coarse-grained model of cell physiology

Universal observations in Biology are sometimes described as “laws”. In E. coli, experimental studies performed over the past six decades have revealed major growth laws relating ribosomal mass fraction and cell size to the growth rate. Because they formalize complex emerging principles in biology,...

Descripción completa

Detalles Bibliográficos
Autores principales: Bertaux, François, von Kügelgen, Julius, Marguerat, Samuel, Shahrezaei, Vahid
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7553314/
https://www.ncbi.nlm.nih.gov/pubmed/32986690
http://dx.doi.org/10.1371/journal.pcbi.1008245
_version_ 1783593575555006464
author Bertaux, François
von Kügelgen, Julius
Marguerat, Samuel
Shahrezaei, Vahid
author_facet Bertaux, François
von Kügelgen, Julius
Marguerat, Samuel
Shahrezaei, Vahid
author_sort Bertaux, François
collection PubMed
description Universal observations in Biology are sometimes described as “laws”. In E. coli, experimental studies performed over the past six decades have revealed major growth laws relating ribosomal mass fraction and cell size to the growth rate. Because they formalize complex emerging principles in biology, growth laws have been instrumental in shaping our understanding of bacterial physiology. Here, we discovered a novel size law that connects cell size to the inverse of the metabolic proteome mass fraction and the active fraction of ribosomes. We used a simple whole-cell coarse-grained model of cell physiology that combines the proteome allocation theory and the structural model of cell division. This integrated model captures all available experimental data connecting the cell proteome composition, ribosome activity, division size and growth rate in response to nutrient quality, antibiotic treatment and increased protein burden. Finally, a stochastic extension of the model explains non-trivial correlations observed in single cell experiments including the adder principle. This work provides a simple and robust theoretical framework for studying the fundamental principles of cell size determination in unicellular organisms.
format Online
Article
Text
id pubmed-7553314
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-75533142020-10-21 A bacterial size law revealed by a coarse-grained model of cell physiology Bertaux, François von Kügelgen, Julius Marguerat, Samuel Shahrezaei, Vahid PLoS Comput Biol Research Article Universal observations in Biology are sometimes described as “laws”. In E. coli, experimental studies performed over the past six decades have revealed major growth laws relating ribosomal mass fraction and cell size to the growth rate. Because they formalize complex emerging principles in biology, growth laws have been instrumental in shaping our understanding of bacterial physiology. Here, we discovered a novel size law that connects cell size to the inverse of the metabolic proteome mass fraction and the active fraction of ribosomes. We used a simple whole-cell coarse-grained model of cell physiology that combines the proteome allocation theory and the structural model of cell division. This integrated model captures all available experimental data connecting the cell proteome composition, ribosome activity, division size and growth rate in response to nutrient quality, antibiotic treatment and increased protein burden. Finally, a stochastic extension of the model explains non-trivial correlations observed in single cell experiments including the adder principle. This work provides a simple and robust theoretical framework for studying the fundamental principles of cell size determination in unicellular organisms. Public Library of Science 2020-09-28 /pmc/articles/PMC7553314/ /pubmed/32986690 http://dx.doi.org/10.1371/journal.pcbi.1008245 Text en © 2020 Bertaux et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Bertaux, François
von Kügelgen, Julius
Marguerat, Samuel
Shahrezaei, Vahid
A bacterial size law revealed by a coarse-grained model of cell physiology
title A bacterial size law revealed by a coarse-grained model of cell physiology
title_full A bacterial size law revealed by a coarse-grained model of cell physiology
title_fullStr A bacterial size law revealed by a coarse-grained model of cell physiology
title_full_unstemmed A bacterial size law revealed by a coarse-grained model of cell physiology
title_short A bacterial size law revealed by a coarse-grained model of cell physiology
title_sort bacterial size law revealed by a coarse-grained model of cell physiology
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7553314/
https://www.ncbi.nlm.nih.gov/pubmed/32986690
http://dx.doi.org/10.1371/journal.pcbi.1008245
work_keys_str_mv AT bertauxfrancois abacterialsizelawrevealedbyacoarsegrainedmodelofcellphysiology
AT vonkugelgenjulius abacterialsizelawrevealedbyacoarsegrainedmodelofcellphysiology
AT margueratsamuel abacterialsizelawrevealedbyacoarsegrainedmodelofcellphysiology
AT shahrezaeivahid abacterialsizelawrevealedbyacoarsegrainedmodelofcellphysiology
AT bertauxfrancois bacterialsizelawrevealedbyacoarsegrainedmodelofcellphysiology
AT vonkugelgenjulius bacterialsizelawrevealedbyacoarsegrainedmodelofcellphysiology
AT margueratsamuel bacterialsizelawrevealedbyacoarsegrainedmodelofcellphysiology
AT shahrezaeivahid bacterialsizelawrevealedbyacoarsegrainedmodelofcellphysiology