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A bacterial size law revealed by a coarse-grained model of cell physiology
Universal observations in Biology are sometimes described as “laws”. In E. coli, experimental studies performed over the past six decades have revealed major growth laws relating ribosomal mass fraction and cell size to the growth rate. Because they formalize complex emerging principles in biology,...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7553314/ https://www.ncbi.nlm.nih.gov/pubmed/32986690 http://dx.doi.org/10.1371/journal.pcbi.1008245 |
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author | Bertaux, François von Kügelgen, Julius Marguerat, Samuel Shahrezaei, Vahid |
author_facet | Bertaux, François von Kügelgen, Julius Marguerat, Samuel Shahrezaei, Vahid |
author_sort | Bertaux, François |
collection | PubMed |
description | Universal observations in Biology are sometimes described as “laws”. In E. coli, experimental studies performed over the past six decades have revealed major growth laws relating ribosomal mass fraction and cell size to the growth rate. Because they formalize complex emerging principles in biology, growth laws have been instrumental in shaping our understanding of bacterial physiology. Here, we discovered a novel size law that connects cell size to the inverse of the metabolic proteome mass fraction and the active fraction of ribosomes. We used a simple whole-cell coarse-grained model of cell physiology that combines the proteome allocation theory and the structural model of cell division. This integrated model captures all available experimental data connecting the cell proteome composition, ribosome activity, division size and growth rate in response to nutrient quality, antibiotic treatment and increased protein burden. Finally, a stochastic extension of the model explains non-trivial correlations observed in single cell experiments including the adder principle. This work provides a simple and robust theoretical framework for studying the fundamental principles of cell size determination in unicellular organisms. |
format | Online Article Text |
id | pubmed-7553314 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-75533142020-10-21 A bacterial size law revealed by a coarse-grained model of cell physiology Bertaux, François von Kügelgen, Julius Marguerat, Samuel Shahrezaei, Vahid PLoS Comput Biol Research Article Universal observations in Biology are sometimes described as “laws”. In E. coli, experimental studies performed over the past six decades have revealed major growth laws relating ribosomal mass fraction and cell size to the growth rate. Because they formalize complex emerging principles in biology, growth laws have been instrumental in shaping our understanding of bacterial physiology. Here, we discovered a novel size law that connects cell size to the inverse of the metabolic proteome mass fraction and the active fraction of ribosomes. We used a simple whole-cell coarse-grained model of cell physiology that combines the proteome allocation theory and the structural model of cell division. This integrated model captures all available experimental data connecting the cell proteome composition, ribosome activity, division size and growth rate in response to nutrient quality, antibiotic treatment and increased protein burden. Finally, a stochastic extension of the model explains non-trivial correlations observed in single cell experiments including the adder principle. This work provides a simple and robust theoretical framework for studying the fundamental principles of cell size determination in unicellular organisms. Public Library of Science 2020-09-28 /pmc/articles/PMC7553314/ /pubmed/32986690 http://dx.doi.org/10.1371/journal.pcbi.1008245 Text en © 2020 Bertaux et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Bertaux, François von Kügelgen, Julius Marguerat, Samuel Shahrezaei, Vahid A bacterial size law revealed by a coarse-grained model of cell physiology |
title | A bacterial size law revealed by a coarse-grained model of cell physiology |
title_full | A bacterial size law revealed by a coarse-grained model of cell physiology |
title_fullStr | A bacterial size law revealed by a coarse-grained model of cell physiology |
title_full_unstemmed | A bacterial size law revealed by a coarse-grained model of cell physiology |
title_short | A bacterial size law revealed by a coarse-grained model of cell physiology |
title_sort | bacterial size law revealed by a coarse-grained model of cell physiology |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7553314/ https://www.ncbi.nlm.nih.gov/pubmed/32986690 http://dx.doi.org/10.1371/journal.pcbi.1008245 |
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