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Capturing Biologically Complex Tissue-Specific Membranes at Different Levels of Compositional Complexity
[Image: see text] Plasma membranes (PMs) contain hundreds of different lipid species that contribute differently to overall bilayer properties. By modulation of these properties, membrane protein function can be affected. Furthermore, inhomogeneous lipid mixing and domains of lipid enrichment/deplet...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7553384/ https://www.ncbi.nlm.nih.gov/pubmed/32790367 http://dx.doi.org/10.1021/acs.jpcb.0c03368 |
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author | Ingólfsson, Helgi I. Bhatia, Harsh Zeppelin, Talia Bennett, W. F. Drew Carpenter, Kristy A. Hsu, Pin-Chia Dharuman, Gautham Bremer, Peer-Timo Schiøtt, Birgit Lightstone, Felice C. Carpenter, Timothy S. |
author_facet | Ingólfsson, Helgi I. Bhatia, Harsh Zeppelin, Talia Bennett, W. F. Drew Carpenter, Kristy A. Hsu, Pin-Chia Dharuman, Gautham Bremer, Peer-Timo Schiøtt, Birgit Lightstone, Felice C. Carpenter, Timothy S. |
author_sort | Ingólfsson, Helgi I. |
collection | PubMed |
description | [Image: see text] Plasma membranes (PMs) contain hundreds of different lipid species that contribute differently to overall bilayer properties. By modulation of these properties, membrane protein function can be affected. Furthermore, inhomogeneous lipid mixing and domains of lipid enrichment/depletion can sort proteins and provide optimal local environments. Recent coarse-grained (CG) Martini molecular dynamics efforts have provided glimpses into lipid organization of different PMs: an “Average” and a “Brain” PM. Their high complexity and large size require long simulations (∼80 μs) for proper sampling. Thus, these simulations are computationally taxing. This level of complexity is beyond the possibilities of all-atom simulations, raising the question—what complexity is needed for “realistic” bilayer properties? We constructed CG Martini PM models of varying complexity (63 down to 8 different lipids). Lipid tail saturations and headgroup combinations were kept as consistent as possible for the “tissues’” (Average/Brain) at three levels of compositional complexity. For each system, we analyzed membrane properties to evaluate which features can be retained at lower complexity and validate eight-component bilayers that can act as reliable mimetics for Average or Brain PMs. Systems of reduced complexity deliver a more robust and malleable tool for computational membrane studies and allow for equivalent all-atom simulations and experiments. |
format | Online Article Text |
id | pubmed-7553384 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-75533842020-10-14 Capturing Biologically Complex Tissue-Specific Membranes at Different Levels of Compositional Complexity Ingólfsson, Helgi I. Bhatia, Harsh Zeppelin, Talia Bennett, W. F. Drew Carpenter, Kristy A. Hsu, Pin-Chia Dharuman, Gautham Bremer, Peer-Timo Schiøtt, Birgit Lightstone, Felice C. Carpenter, Timothy S. J Phys Chem B [Image: see text] Plasma membranes (PMs) contain hundreds of different lipid species that contribute differently to overall bilayer properties. By modulation of these properties, membrane protein function can be affected. Furthermore, inhomogeneous lipid mixing and domains of lipid enrichment/depletion can sort proteins and provide optimal local environments. Recent coarse-grained (CG) Martini molecular dynamics efforts have provided glimpses into lipid organization of different PMs: an “Average” and a “Brain” PM. Their high complexity and large size require long simulations (∼80 μs) for proper sampling. Thus, these simulations are computationally taxing. This level of complexity is beyond the possibilities of all-atom simulations, raising the question—what complexity is needed for “realistic” bilayer properties? We constructed CG Martini PM models of varying complexity (63 down to 8 different lipids). Lipid tail saturations and headgroup combinations were kept as consistent as possible for the “tissues’” (Average/Brain) at three levels of compositional complexity. For each system, we analyzed membrane properties to evaluate which features can be retained at lower complexity and validate eight-component bilayers that can act as reliable mimetics for Average or Brain PMs. Systems of reduced complexity deliver a more robust and malleable tool for computational membrane studies and allow for equivalent all-atom simulations and experiments. American Chemical Society 2020-08-11 2020-09-10 /pmc/articles/PMC7553384/ /pubmed/32790367 http://dx.doi.org/10.1021/acs.jpcb.0c03368 Text en This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Ingólfsson, Helgi I. Bhatia, Harsh Zeppelin, Talia Bennett, W. F. Drew Carpenter, Kristy A. Hsu, Pin-Chia Dharuman, Gautham Bremer, Peer-Timo Schiøtt, Birgit Lightstone, Felice C. Carpenter, Timothy S. Capturing Biologically Complex Tissue-Specific Membranes at Different Levels of Compositional Complexity |
title | Capturing Biologically Complex Tissue-Specific Membranes
at Different Levels of Compositional Complexity |
title_full | Capturing Biologically Complex Tissue-Specific Membranes
at Different Levels of Compositional Complexity |
title_fullStr | Capturing Biologically Complex Tissue-Specific Membranes
at Different Levels of Compositional Complexity |
title_full_unstemmed | Capturing Biologically Complex Tissue-Specific Membranes
at Different Levels of Compositional Complexity |
title_short | Capturing Biologically Complex Tissue-Specific Membranes
at Different Levels of Compositional Complexity |
title_sort | capturing biologically complex tissue-specific membranes
at different levels of compositional complexity |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7553384/ https://www.ncbi.nlm.nih.gov/pubmed/32790367 http://dx.doi.org/10.1021/acs.jpcb.0c03368 |
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