Cargando…

Genetic Features of Lung Adenocarcinoma with Ground-Glass Opacity: What Causes the Invasiveness of Lung Adenocarcinoma?

BACKGROUND: Lung adenocarcinoma (LUAD) with ground-glass opacity (GGO) can become aggravated, but the reasons for this aggravation are not fully understood. The goal of this study was to analyze the genetic features and causes of progression of GGO LUAD. METHODS: LUAD tumor samples and normal tissue...

Descripción completa

Detalles Bibliográficos
Autores principales: Kim, Dohun, Lee, Jong-Young, Yoo, Jin Young, Cho, Jun Yeun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Korean Society for Thoracic and Cardiovascular Surgery 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7553832/
https://www.ncbi.nlm.nih.gov/pubmed/33020345
http://dx.doi.org/10.5090/kjtcs.20.013
_version_ 1783593683866615808
author Kim, Dohun
Lee, Jong-Young
Yoo, Jin Young
Cho, Jun Yeun
author_facet Kim, Dohun
Lee, Jong-Young
Yoo, Jin Young
Cho, Jun Yeun
author_sort Kim, Dohun
collection PubMed
description BACKGROUND: Lung adenocarcinoma (LUAD) with ground-glass opacity (GGO) can become aggravated, but the reasons for this aggravation are not fully understood. The goal of this study was to analyze the genetic features and causes of progression of GGO LUAD. METHODS: LUAD tumor samples and normal tissues were analyzed using an Illumina HiSeq 4000 system. After the tumor mutational burden (TMB) was calculated, the identified mutations were classified as those found only in GGO LUAD, those present only in non- GGO LUAD, and those common to both tissue types. Ten high-frequency genes were selected from each domain, after which protein interaction network analysis was conducted. RESULTS: Overall, 227 mutations in GGO LUAD, 212 in non-GGO LUAD, and 48 that were common to both tumor types were found. The TMB was 8.8 in GGO and 7.8 in non-GGO samples. In GGO LUAD, mutations of FCGBP and SFTPA1 were identified. FOXQ1, IRF5, and MAGEC1 mutations were common to both types, and CDC27 and NOTCH4 mutations were identified in the non-GGO LUAD. Protein interaction network analysis indicated that IRF5 (common to both tissue types) and CDC27 (found in the non-GGO LUAD) had significant biological functions related to the cell cycle and proliferation. CONCLUSION: In conclusion, GGO LUAD exhibited a higher TMB than non-GGO LUAD. No clinically meaningful mutations were found to be specific to GGO LUAD, but mutations involved in the epithelial-mesenchymal transition or cell cycle were found in both tumor types and in non-GGO tissue alone. These findings could explain the non-invasiveness of GGO-type LUAD.
format Online
Article
Text
id pubmed-7553832
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher The Korean Society for Thoracic and Cardiovascular Surgery
record_format MEDLINE/PubMed
spelling pubmed-75538322020-10-20 Genetic Features of Lung Adenocarcinoma with Ground-Glass Opacity: What Causes the Invasiveness of Lung Adenocarcinoma? Kim, Dohun Lee, Jong-Young Yoo, Jin Young Cho, Jun Yeun Korean J Thorac Cardiovasc Surg Basic Research BACKGROUND: Lung adenocarcinoma (LUAD) with ground-glass opacity (GGO) can become aggravated, but the reasons for this aggravation are not fully understood. The goal of this study was to analyze the genetic features and causes of progression of GGO LUAD. METHODS: LUAD tumor samples and normal tissues were analyzed using an Illumina HiSeq 4000 system. After the tumor mutational burden (TMB) was calculated, the identified mutations were classified as those found only in GGO LUAD, those present only in non- GGO LUAD, and those common to both tissue types. Ten high-frequency genes were selected from each domain, after which protein interaction network analysis was conducted. RESULTS: Overall, 227 mutations in GGO LUAD, 212 in non-GGO LUAD, and 48 that were common to both tumor types were found. The TMB was 8.8 in GGO and 7.8 in non-GGO samples. In GGO LUAD, mutations of FCGBP and SFTPA1 were identified. FOXQ1, IRF5, and MAGEC1 mutations were common to both types, and CDC27 and NOTCH4 mutations were identified in the non-GGO LUAD. Protein interaction network analysis indicated that IRF5 (common to both tissue types) and CDC27 (found in the non-GGO LUAD) had significant biological functions related to the cell cycle and proliferation. CONCLUSION: In conclusion, GGO LUAD exhibited a higher TMB than non-GGO LUAD. No clinically meaningful mutations were found to be specific to GGO LUAD, but mutations involved in the epithelial-mesenchymal transition or cell cycle were found in both tumor types and in non-GGO tissue alone. These findings could explain the non-invasiveness of GGO-type LUAD. The Korean Society for Thoracic and Cardiovascular Surgery 2020-10-05 2020-10-05 /pmc/articles/PMC7553832/ /pubmed/33020345 http://dx.doi.org/10.5090/kjtcs.20.013 Text en Copyright © The Korean Society for Thoracic and Cardiovascular Surgery. 2020. All right reserved. This is an open-access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Basic Research
Kim, Dohun
Lee, Jong-Young
Yoo, Jin Young
Cho, Jun Yeun
Genetic Features of Lung Adenocarcinoma with Ground-Glass Opacity: What Causes the Invasiveness of Lung Adenocarcinoma?
title Genetic Features of Lung Adenocarcinoma with Ground-Glass Opacity: What Causes the Invasiveness of Lung Adenocarcinoma?
title_full Genetic Features of Lung Adenocarcinoma with Ground-Glass Opacity: What Causes the Invasiveness of Lung Adenocarcinoma?
title_fullStr Genetic Features of Lung Adenocarcinoma with Ground-Glass Opacity: What Causes the Invasiveness of Lung Adenocarcinoma?
title_full_unstemmed Genetic Features of Lung Adenocarcinoma with Ground-Glass Opacity: What Causes the Invasiveness of Lung Adenocarcinoma?
title_short Genetic Features of Lung Adenocarcinoma with Ground-Glass Opacity: What Causes the Invasiveness of Lung Adenocarcinoma?
title_sort genetic features of lung adenocarcinoma with ground-glass opacity: what causes the invasiveness of lung adenocarcinoma?
topic Basic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7553832/
https://www.ncbi.nlm.nih.gov/pubmed/33020345
http://dx.doi.org/10.5090/kjtcs.20.013
work_keys_str_mv AT kimdohun geneticfeaturesoflungadenocarcinomawithgroundglassopacitywhatcausestheinvasivenessoflungadenocarcinoma
AT leejongyoung geneticfeaturesoflungadenocarcinomawithgroundglassopacitywhatcausestheinvasivenessoflungadenocarcinoma
AT yoojinyoung geneticfeaturesoflungadenocarcinomawithgroundglassopacitywhatcausestheinvasivenessoflungadenocarcinoma
AT chojunyeun geneticfeaturesoflungadenocarcinomawithgroundglassopacitywhatcausestheinvasivenessoflungadenocarcinoma