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Data based predictive models for odor perception

Machine learning and data analytics are being increasingly used for quantitative structure property relation (QSPR) applications in the chemical domain where the traditional Edisonian approach towards knowledge-discovery have not been fruitful. The perception of odorant stimuli is one such applicati...

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Autores principales: Chacko, Rinu, Jain, Deepak, Patwardhan, Manasi, Puri, Abhishek, Karande, Shirish, Rai, Beena
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7553929/
https://www.ncbi.nlm.nih.gov/pubmed/33051564
http://dx.doi.org/10.1038/s41598-020-73978-1
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author Chacko, Rinu
Jain, Deepak
Patwardhan, Manasi
Puri, Abhishek
Karande, Shirish
Rai, Beena
author_facet Chacko, Rinu
Jain, Deepak
Patwardhan, Manasi
Puri, Abhishek
Karande, Shirish
Rai, Beena
author_sort Chacko, Rinu
collection PubMed
description Machine learning and data analytics are being increasingly used for quantitative structure property relation (QSPR) applications in the chemical domain where the traditional Edisonian approach towards knowledge-discovery have not been fruitful. The perception of odorant stimuli is one such application as olfaction is the least understood among all the other senses. In this study, we employ machine learning based algorithms and data analytics to address the efficacy of using a data-driven approach to predict the perceptual attributes of an odorant namely the odorant characters (OC) of “sweet” and “musky”. We first analyze a psychophysical dataset containing perceptual ratings of 55 subjects to reveal patterns in the ratings given by subjects. We then use the data to train several machine learning algorithms such as random forest, gradient boosting and support vector machine for prediction of the odor characters and report the structural features correlating well with the odor characters based on the optimal model. Furthermore, we analyze the impact of the data quality on the performance of the models by comparing the semantic descriptors generally associated with a given odorant to its perception by majority of the subjects. The study presents a methodology for developing models for odor perception and provides insights on the perception of odorants by untrained human subjects and the effect of the inherent bias in the perception data on the model performance. The models and methodology developed here could be used for predicting odor characters of new odorants.
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spelling pubmed-75539292020-10-14 Data based predictive models for odor perception Chacko, Rinu Jain, Deepak Patwardhan, Manasi Puri, Abhishek Karande, Shirish Rai, Beena Sci Rep Article Machine learning and data analytics are being increasingly used for quantitative structure property relation (QSPR) applications in the chemical domain where the traditional Edisonian approach towards knowledge-discovery have not been fruitful. The perception of odorant stimuli is one such application as olfaction is the least understood among all the other senses. In this study, we employ machine learning based algorithms and data analytics to address the efficacy of using a data-driven approach to predict the perceptual attributes of an odorant namely the odorant characters (OC) of “sweet” and “musky”. We first analyze a psychophysical dataset containing perceptual ratings of 55 subjects to reveal patterns in the ratings given by subjects. We then use the data to train several machine learning algorithms such as random forest, gradient boosting and support vector machine for prediction of the odor characters and report the structural features correlating well with the odor characters based on the optimal model. Furthermore, we analyze the impact of the data quality on the performance of the models by comparing the semantic descriptors generally associated with a given odorant to its perception by majority of the subjects. The study presents a methodology for developing models for odor perception and provides insights on the perception of odorants by untrained human subjects and the effect of the inherent bias in the perception data on the model performance. The models and methodology developed here could be used for predicting odor characters of new odorants. Nature Publishing Group UK 2020-10-13 /pmc/articles/PMC7553929/ /pubmed/33051564 http://dx.doi.org/10.1038/s41598-020-73978-1 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Chacko, Rinu
Jain, Deepak
Patwardhan, Manasi
Puri, Abhishek
Karande, Shirish
Rai, Beena
Data based predictive models for odor perception
title Data based predictive models for odor perception
title_full Data based predictive models for odor perception
title_fullStr Data based predictive models for odor perception
title_full_unstemmed Data based predictive models for odor perception
title_short Data based predictive models for odor perception
title_sort data based predictive models for odor perception
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7553929/
https://www.ncbi.nlm.nih.gov/pubmed/33051564
http://dx.doi.org/10.1038/s41598-020-73978-1
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