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Viral metagenomes of Lake Soyang, the largest freshwater lake in South Korea
A high number of viral metagenomes have revealed countless genomes of putative bacteriophages that have not yet been identified due to limitations in bacteriophage cultures. However, most virome studies have been focused on marine or gut environments, thereby leaving the viral community structure of...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7553992/ https://www.ncbi.nlm.nih.gov/pubmed/33051444 http://dx.doi.org/10.1038/s41597-020-00695-9 |
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author | Moon, Kira Kim, Suhyun Kang, Ilnam Cho, Jang-Cheon |
author_facet | Moon, Kira Kim, Suhyun Kang, Ilnam Cho, Jang-Cheon |
author_sort | Moon, Kira |
collection | PubMed |
description | A high number of viral metagenomes have revealed countless genomes of putative bacteriophages that have not yet been identified due to limitations in bacteriophage cultures. However, most virome studies have been focused on marine or gut environments, thereby leaving the viral community structure of freshwater lakes unclear. Because the lakes located around the globe have independent ecosystems with unique characteristics, viral community structures are also distinctive but comparable. Here, we present data on viral metagenomes that were seasonally collected at a depth of 1 m from Lake Soyang, the largest freshwater reservoir in South Korea. Through shotgun metagenome sequencing using the Illumina MiSeq platform, 3.08 to 5.54-Gbps of reads per virome were obtained. To predict the viral genome sequences within Lake Soyang, contigs were constructed and 648 to 1,004 putative viral contigs were obtained per sample. We expect that both viral metagenome reads and viral contigs would contribute in comparing and understanding of viral communities among different freshwater lakes depending on seasonal changes. |
format | Online Article Text |
id | pubmed-7553992 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-75539922020-10-19 Viral metagenomes of Lake Soyang, the largest freshwater lake in South Korea Moon, Kira Kim, Suhyun Kang, Ilnam Cho, Jang-Cheon Sci Data Data Descriptor A high number of viral metagenomes have revealed countless genomes of putative bacteriophages that have not yet been identified due to limitations in bacteriophage cultures. However, most virome studies have been focused on marine or gut environments, thereby leaving the viral community structure of freshwater lakes unclear. Because the lakes located around the globe have independent ecosystems with unique characteristics, viral community structures are also distinctive but comparable. Here, we present data on viral metagenomes that were seasonally collected at a depth of 1 m from Lake Soyang, the largest freshwater reservoir in South Korea. Through shotgun metagenome sequencing using the Illumina MiSeq platform, 3.08 to 5.54-Gbps of reads per virome were obtained. To predict the viral genome sequences within Lake Soyang, contigs were constructed and 648 to 1,004 putative viral contigs were obtained per sample. We expect that both viral metagenome reads and viral contigs would contribute in comparing and understanding of viral communities among different freshwater lakes depending on seasonal changes. Nature Publishing Group UK 2020-10-13 /pmc/articles/PMC7553992/ /pubmed/33051444 http://dx.doi.org/10.1038/s41597-020-00695-9 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Moon, Kira Kim, Suhyun Kang, Ilnam Cho, Jang-Cheon Viral metagenomes of Lake Soyang, the largest freshwater lake in South Korea |
title | Viral metagenomes of Lake Soyang, the largest freshwater lake in South Korea |
title_full | Viral metagenomes of Lake Soyang, the largest freshwater lake in South Korea |
title_fullStr | Viral metagenomes of Lake Soyang, the largest freshwater lake in South Korea |
title_full_unstemmed | Viral metagenomes of Lake Soyang, the largest freshwater lake in South Korea |
title_short | Viral metagenomes of Lake Soyang, the largest freshwater lake in South Korea |
title_sort | viral metagenomes of lake soyang, the largest freshwater lake in south korea |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7553992/ https://www.ncbi.nlm.nih.gov/pubmed/33051444 http://dx.doi.org/10.1038/s41597-020-00695-9 |
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