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R/UAStools::plotshpcreate: Create Multi-Polygon Shapefiles for Extraction of Research Plot Scale Agriculture Remote Sensing Data
Agricultural researchers are embracing remote sensing tools to phenotype and monitor agriculture crops. Specifically, large quantities of data are now being collected on small plot research studies using Unoccupied Aerial Systems (UAS, aka drones), ground systems, or other technologies but data proc...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7554333/ https://www.ncbi.nlm.nih.gov/pubmed/33101323 http://dx.doi.org/10.3389/fpls.2020.511768 |
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author | Anderson, Steven L. Murray, Seth C. |
author_facet | Anderson, Steven L. Murray, Seth C. |
author_sort | Anderson, Steven L. |
collection | PubMed |
description | Agricultural researchers are embracing remote sensing tools to phenotype and monitor agriculture crops. Specifically, large quantities of data are now being collected on small plot research studies using Unoccupied Aerial Systems (UAS, aka drones), ground systems, or other technologies but data processing and analysis lags behind. One major contributor to current data processing bottlenecks has been the lack of publicly available software tools tailored towards remote sensing of small plots and usability for researchers inexperienced in remote sensing. To address these needs we created plot shapefile maker (R/UAS::plotshpcreate): an open source R function which rapidly creates ESRI polygon shapefiles to the desired dimensions of individual agriculture research plots areas of interest and associates plot specific information. Plotshpcreate was developed to utilize inputs containing experimental design, field orientation, and plot dimensions for easily creating a multi-polygon shapefile of an entire small plot experiment. Output shapefiles are based on the user inputs geolocation of the research field ensuring accurate overlay of polygons often without manual user adjustment. The output shapefile is useful in GIS software to extract plot level data tracing back to the unique IDs of the experimental plots. Plotshpcreate is available on GitHub (https://github.com/andersst91/UAStools). |
format | Online Article Text |
id | pubmed-7554333 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-75543332020-10-22 R/UAStools::plotshpcreate: Create Multi-Polygon Shapefiles for Extraction of Research Plot Scale Agriculture Remote Sensing Data Anderson, Steven L. Murray, Seth C. Front Plant Sci Plant Science Agricultural researchers are embracing remote sensing tools to phenotype and monitor agriculture crops. Specifically, large quantities of data are now being collected on small plot research studies using Unoccupied Aerial Systems (UAS, aka drones), ground systems, or other technologies but data processing and analysis lags behind. One major contributor to current data processing bottlenecks has been the lack of publicly available software tools tailored towards remote sensing of small plots and usability for researchers inexperienced in remote sensing. To address these needs we created plot shapefile maker (R/UAS::plotshpcreate): an open source R function which rapidly creates ESRI polygon shapefiles to the desired dimensions of individual agriculture research plots areas of interest and associates plot specific information. Plotshpcreate was developed to utilize inputs containing experimental design, field orientation, and plot dimensions for easily creating a multi-polygon shapefile of an entire small plot experiment. Output shapefiles are based on the user inputs geolocation of the research field ensuring accurate overlay of polygons often without manual user adjustment. The output shapefile is useful in GIS software to extract plot level data tracing back to the unique IDs of the experimental plots. Plotshpcreate is available on GitHub (https://github.com/andersst91/UAStools). Frontiers Media S.A. 2020-09-30 /pmc/articles/PMC7554333/ /pubmed/33101323 http://dx.doi.org/10.3389/fpls.2020.511768 Text en Copyright © 2020 Anderson and Murray http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Anderson, Steven L. Murray, Seth C. R/UAStools::plotshpcreate: Create Multi-Polygon Shapefiles for Extraction of Research Plot Scale Agriculture Remote Sensing Data |
title | R/UAStools::plotshpcreate: Create Multi-Polygon Shapefiles for Extraction of Research Plot Scale Agriculture Remote Sensing Data |
title_full | R/UAStools::plotshpcreate: Create Multi-Polygon Shapefiles for Extraction of Research Plot Scale Agriculture Remote Sensing Data |
title_fullStr | R/UAStools::plotshpcreate: Create Multi-Polygon Shapefiles for Extraction of Research Plot Scale Agriculture Remote Sensing Data |
title_full_unstemmed | R/UAStools::plotshpcreate: Create Multi-Polygon Shapefiles for Extraction of Research Plot Scale Agriculture Remote Sensing Data |
title_short | R/UAStools::plotshpcreate: Create Multi-Polygon Shapefiles for Extraction of Research Plot Scale Agriculture Remote Sensing Data |
title_sort | r/uastools::plotshpcreate: create multi-polygon shapefiles for extraction of research plot scale agriculture remote sensing data |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7554333/ https://www.ncbi.nlm.nih.gov/pubmed/33101323 http://dx.doi.org/10.3389/fpls.2020.511768 |
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