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A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas
In cancer radiomics, textural features evaluated from image intensity-derived gray-level co-occurrence matrices (GLCMs) have been studied to evaluate gray-level spatial dependence within the regions of interest in the brain. Most of these analysis work with summary statistics (or texture-based featu...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7554657/ https://www.ncbi.nlm.nih.gov/pubmed/33035963 http://dx.doi.org/10.1016/j.nicl.2020.102437 |
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author | Chekouo, Thierry Mohammed, Shariq Rao, Arvind |
author_facet | Chekouo, Thierry Mohammed, Shariq Rao, Arvind |
author_sort | Chekouo, Thierry |
collection | PubMed |
description | In cancer radiomics, textural features evaluated from image intensity-derived gray-level co-occurrence matrices (GLCMs) have been studied to evaluate gray-level spatial dependence within the regions of interest in the brain. Most of these analysis work with summary statistics (or texture-based features) constructed using the GLCM entries, and potentially overlook other structural properties in the GLCM. In our proposed Bayesian framework, we treat each GLCM as a realization of a two-dimensional stochastic functional process observed with error at discrete time points. The latent process is then combined with the outcome model to evaluate the prediction performance. We use simulation studies to assess the performance of our method and apply it to data collected from individuals with lower grade gliomas. We found our approach to outperform competing methods that use only summary statistics to predict isocitrate dehydrogenase (IDH) mutation status. |
format | Online Article Text |
id | pubmed-7554657 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-75546572020-10-19 A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas Chekouo, Thierry Mohammed, Shariq Rao, Arvind Neuroimage Clin Regular Article In cancer radiomics, textural features evaluated from image intensity-derived gray-level co-occurrence matrices (GLCMs) have been studied to evaluate gray-level spatial dependence within the regions of interest in the brain. Most of these analysis work with summary statistics (or texture-based features) constructed using the GLCM entries, and potentially overlook other structural properties in the GLCM. In our proposed Bayesian framework, we treat each GLCM as a realization of a two-dimensional stochastic functional process observed with error at discrete time points. The latent process is then combined with the outcome model to evaluate the prediction performance. We use simulation studies to assess the performance of our method and apply it to data collected from individuals with lower grade gliomas. We found our approach to outperform competing methods that use only summary statistics to predict isocitrate dehydrogenase (IDH) mutation status. Elsevier 2020-09-18 /pmc/articles/PMC7554657/ /pubmed/33035963 http://dx.doi.org/10.1016/j.nicl.2020.102437 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Regular Article Chekouo, Thierry Mohammed, Shariq Rao, Arvind A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas |
title | A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas |
title_full | A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas |
title_fullStr | A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas |
title_full_unstemmed | A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas |
title_short | A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas |
title_sort | bayesian 2d functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas |
topic | Regular Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7554657/ https://www.ncbi.nlm.nih.gov/pubmed/33035963 http://dx.doi.org/10.1016/j.nicl.2020.102437 |
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