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A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas

In cancer radiomics, textural features evaluated from image intensity-derived gray-level co-occurrence matrices (GLCMs) have been studied to evaluate gray-level spatial dependence within the regions of interest in the brain. Most of these analysis work with summary statistics (or texture-based featu...

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Detalles Bibliográficos
Autores principales: Chekouo, Thierry, Mohammed, Shariq, Rao, Arvind
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7554657/
https://www.ncbi.nlm.nih.gov/pubmed/33035963
http://dx.doi.org/10.1016/j.nicl.2020.102437
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author Chekouo, Thierry
Mohammed, Shariq
Rao, Arvind
author_facet Chekouo, Thierry
Mohammed, Shariq
Rao, Arvind
author_sort Chekouo, Thierry
collection PubMed
description In cancer radiomics, textural features evaluated from image intensity-derived gray-level co-occurrence matrices (GLCMs) have been studied to evaluate gray-level spatial dependence within the regions of interest in the brain. Most of these analysis work with summary statistics (or texture-based features) constructed using the GLCM entries, and potentially overlook other structural properties in the GLCM. In our proposed Bayesian framework, we treat each GLCM as a realization of a two-dimensional stochastic functional process observed with error at discrete time points. The latent process is then combined with the outcome model to evaluate the prediction performance. We use simulation studies to assess the performance of our method and apply it to data collected from individuals with lower grade gliomas. We found our approach to outperform competing methods that use only summary statistics to predict isocitrate dehydrogenase (IDH) mutation status.
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spelling pubmed-75546572020-10-19 A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas Chekouo, Thierry Mohammed, Shariq Rao, Arvind Neuroimage Clin Regular Article In cancer radiomics, textural features evaluated from image intensity-derived gray-level co-occurrence matrices (GLCMs) have been studied to evaluate gray-level spatial dependence within the regions of interest in the brain. Most of these analysis work with summary statistics (or texture-based features) constructed using the GLCM entries, and potentially overlook other structural properties in the GLCM. In our proposed Bayesian framework, we treat each GLCM as a realization of a two-dimensional stochastic functional process observed with error at discrete time points. The latent process is then combined with the outcome model to evaluate the prediction performance. We use simulation studies to assess the performance of our method and apply it to data collected from individuals with lower grade gliomas. We found our approach to outperform competing methods that use only summary statistics to predict isocitrate dehydrogenase (IDH) mutation status. Elsevier 2020-09-18 /pmc/articles/PMC7554657/ /pubmed/33035963 http://dx.doi.org/10.1016/j.nicl.2020.102437 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Regular Article
Chekouo, Thierry
Mohammed, Shariq
Rao, Arvind
A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas
title A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas
title_full A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas
title_fullStr A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas
title_full_unstemmed A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas
title_short A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas
title_sort bayesian 2d functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas
topic Regular Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7554657/
https://www.ncbi.nlm.nih.gov/pubmed/33035963
http://dx.doi.org/10.1016/j.nicl.2020.102437
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