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Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight
Rodent models have been widely used as analogs for estimating spaceflight-relevant molecular mechanisms in human tissues. NASA GeneLab provides access to numerous spaceflight omics datasets that can potentially generate novel insights and hypotheses about fundamental space biology when analyzed in n...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7555136/ https://www.ncbi.nlm.nih.gov/pubmed/32933026 http://dx.doi.org/10.3390/life10090196 |
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author | Fujita, Shin-ichiro Rutter, Lindsay Ong, Quang Muratani, Masafumi |
author_facet | Fujita, Shin-ichiro Rutter, Lindsay Ong, Quang Muratani, Masafumi |
author_sort | Fujita, Shin-ichiro |
collection | PubMed |
description | Rodent models have been widely used as analogs for estimating spaceflight-relevant molecular mechanisms in human tissues. NASA GeneLab provides access to numerous spaceflight omics datasets that can potentially generate novel insights and hypotheses about fundamental space biology when analyzed in new and integrated fashions. Here, we performed a pilot study to elucidate space biological mechanisms across tissues by reanalyzing mouse RNA-sequencing spaceflight data archived on NASA GeneLab. Our results showed that clock gene expressions in spaceflight mice were altered compared with those in ground control mice. Furthermore, the results suggested that spaceflight promotes asynchrony of clock gene expressions between peripheral tissues. Abnormal circadian rhythms are associated not only with jet lag and sleep disorders but also with cancer, lifestyle-related diseases, and mental disorders. Overall, our findings highlight the importance of elucidating the causes of circadian rhythm disruptions using the unique approach of space biology research to one day potentially develop countermeasures that benefit humans on Earth and in space. |
format | Online Article Text |
id | pubmed-7555136 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-75551362020-10-14 Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight Fujita, Shin-ichiro Rutter, Lindsay Ong, Quang Muratani, Masafumi Life (Basel) Article Rodent models have been widely used as analogs for estimating spaceflight-relevant molecular mechanisms in human tissues. NASA GeneLab provides access to numerous spaceflight omics datasets that can potentially generate novel insights and hypotheses about fundamental space biology when analyzed in new and integrated fashions. Here, we performed a pilot study to elucidate space biological mechanisms across tissues by reanalyzing mouse RNA-sequencing spaceflight data archived on NASA GeneLab. Our results showed that clock gene expressions in spaceflight mice were altered compared with those in ground control mice. Furthermore, the results suggested that spaceflight promotes asynchrony of clock gene expressions between peripheral tissues. Abnormal circadian rhythms are associated not only with jet lag and sleep disorders but also with cancer, lifestyle-related diseases, and mental disorders. Overall, our findings highlight the importance of elucidating the causes of circadian rhythm disruptions using the unique approach of space biology research to one day potentially develop countermeasures that benefit humans on Earth and in space. MDPI 2020-09-11 /pmc/articles/PMC7555136/ /pubmed/32933026 http://dx.doi.org/10.3390/life10090196 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Fujita, Shin-ichiro Rutter, Lindsay Ong, Quang Muratani, Masafumi Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight |
title | Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight |
title_full | Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight |
title_fullStr | Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight |
title_full_unstemmed | Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight |
title_short | Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight |
title_sort | integrated rna-seq analysis indicates asynchrony in clock genes between tissues under spaceflight |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7555136/ https://www.ncbi.nlm.nih.gov/pubmed/32933026 http://dx.doi.org/10.3390/life10090196 |
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