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Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight

Rodent models have been widely used as analogs for estimating spaceflight-relevant molecular mechanisms in human tissues. NASA GeneLab provides access to numerous spaceflight omics datasets that can potentially generate novel insights and hypotheses about fundamental space biology when analyzed in n...

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Autores principales: Fujita, Shin-ichiro, Rutter, Lindsay, Ong, Quang, Muratani, Masafumi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7555136/
https://www.ncbi.nlm.nih.gov/pubmed/32933026
http://dx.doi.org/10.3390/life10090196
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author Fujita, Shin-ichiro
Rutter, Lindsay
Ong, Quang
Muratani, Masafumi
author_facet Fujita, Shin-ichiro
Rutter, Lindsay
Ong, Quang
Muratani, Masafumi
author_sort Fujita, Shin-ichiro
collection PubMed
description Rodent models have been widely used as analogs for estimating spaceflight-relevant molecular mechanisms in human tissues. NASA GeneLab provides access to numerous spaceflight omics datasets that can potentially generate novel insights and hypotheses about fundamental space biology when analyzed in new and integrated fashions. Here, we performed a pilot study to elucidate space biological mechanisms across tissues by reanalyzing mouse RNA-sequencing spaceflight data archived on NASA GeneLab. Our results showed that clock gene expressions in spaceflight mice were altered compared with those in ground control mice. Furthermore, the results suggested that spaceflight promotes asynchrony of clock gene expressions between peripheral tissues. Abnormal circadian rhythms are associated not only with jet lag and sleep disorders but also with cancer, lifestyle-related diseases, and mental disorders. Overall, our findings highlight the importance of elucidating the causes of circadian rhythm disruptions using the unique approach of space biology research to one day potentially develop countermeasures that benefit humans on Earth and in space.
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spelling pubmed-75551362020-10-14 Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight Fujita, Shin-ichiro Rutter, Lindsay Ong, Quang Muratani, Masafumi Life (Basel) Article Rodent models have been widely used as analogs for estimating spaceflight-relevant molecular mechanisms in human tissues. NASA GeneLab provides access to numerous spaceflight omics datasets that can potentially generate novel insights and hypotheses about fundamental space biology when analyzed in new and integrated fashions. Here, we performed a pilot study to elucidate space biological mechanisms across tissues by reanalyzing mouse RNA-sequencing spaceflight data archived on NASA GeneLab. Our results showed that clock gene expressions in spaceflight mice were altered compared with those in ground control mice. Furthermore, the results suggested that spaceflight promotes asynchrony of clock gene expressions between peripheral tissues. Abnormal circadian rhythms are associated not only with jet lag and sleep disorders but also with cancer, lifestyle-related diseases, and mental disorders. Overall, our findings highlight the importance of elucidating the causes of circadian rhythm disruptions using the unique approach of space biology research to one day potentially develop countermeasures that benefit humans on Earth and in space. MDPI 2020-09-11 /pmc/articles/PMC7555136/ /pubmed/32933026 http://dx.doi.org/10.3390/life10090196 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Fujita, Shin-ichiro
Rutter, Lindsay
Ong, Quang
Muratani, Masafumi
Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight
title Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight
title_full Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight
title_fullStr Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight
title_full_unstemmed Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight
title_short Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight
title_sort integrated rna-seq analysis indicates asynchrony in clock genes between tissues under spaceflight
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7555136/
https://www.ncbi.nlm.nih.gov/pubmed/32933026
http://dx.doi.org/10.3390/life10090196
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