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Semantic Annotation of Predictive Modelling Experiments
In this paper, we address the task of representation, semantic annotation, storage, and querying of predictive modelling experiments. We introduce OntoExp, an OntoDM module which gives a more granular representation of a predictive modeling experiment and enables annotation of the experiment’s prove...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7556382/ http://dx.doi.org/10.1007/978-3-030-61527-7_9 |
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author | Tolovski, Ilin Džeroski, Sašo Panov, Panče |
author_facet | Tolovski, Ilin Džeroski, Sašo Panov, Panče |
author_sort | Tolovski, Ilin |
collection | PubMed |
description | In this paper, we address the task of representation, semantic annotation, storage, and querying of predictive modelling experiments. We introduce OntoExp, an OntoDM module which gives a more granular representation of a predictive modeling experiment and enables annotation of the experiment’s provenance, algorithm implementations, parameter settings and output metrics. This module is incorporated in SemanticHub, an online system that allows execution, annotation, storage and querying of predictive modeling experiments. The system offers two different user scenarios. The users can either define their own experiment and execute it, or they can browse the repository of completed experimental workflows across different predictive modelling tasks. Here, we showcase the capabilities of the system with executing multi-target regression experiment on a water quality prediction dataset using the Clus software. The system and created repositories are evaluated based on the FAIR data stewardship guidelines. The evaluation shows that OntoExp and SemanticHub provide the infrastructure needed for semantic annotation, execution, storage, and querying of the experiments. |
format | Online Article Text |
id | pubmed-7556382 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
record_format | MEDLINE/PubMed |
spelling | pubmed-75563822020-10-15 Semantic Annotation of Predictive Modelling Experiments Tolovski, Ilin Džeroski, Sašo Panov, Panče Discovery Science Article In this paper, we address the task of representation, semantic annotation, storage, and querying of predictive modelling experiments. We introduce OntoExp, an OntoDM module which gives a more granular representation of a predictive modeling experiment and enables annotation of the experiment’s provenance, algorithm implementations, parameter settings and output metrics. This module is incorporated in SemanticHub, an online system that allows execution, annotation, storage and querying of predictive modeling experiments. The system offers two different user scenarios. The users can either define their own experiment and execute it, or they can browse the repository of completed experimental workflows across different predictive modelling tasks. Here, we showcase the capabilities of the system with executing multi-target regression experiment on a water quality prediction dataset using the Clus software. The system and created repositories are evaluated based on the FAIR data stewardship guidelines. The evaluation shows that OntoExp and SemanticHub provide the infrastructure needed for semantic annotation, execution, storage, and querying of the experiments. 2020-09-19 /pmc/articles/PMC7556382/ http://dx.doi.org/10.1007/978-3-030-61527-7_9 Text en © The Author(s) 2020 Open Access This chapter is licensed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license and indicate if changes were made. The images or other third party material in this chapter are included in the chapter's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the chapter's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. |
spellingShingle | Article Tolovski, Ilin Džeroski, Sašo Panov, Panče Semantic Annotation of Predictive Modelling Experiments |
title | Semantic Annotation of Predictive Modelling Experiments |
title_full | Semantic Annotation of Predictive Modelling Experiments |
title_fullStr | Semantic Annotation of Predictive Modelling Experiments |
title_full_unstemmed | Semantic Annotation of Predictive Modelling Experiments |
title_short | Semantic Annotation of Predictive Modelling Experiments |
title_sort | semantic annotation of predictive modelling experiments |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7556382/ http://dx.doi.org/10.1007/978-3-030-61527-7_9 |
work_keys_str_mv | AT tolovskiilin semanticannotationofpredictivemodellingexperiments AT dzeroskisaso semanticannotationofpredictivemodellingexperiments AT panovpance semanticannotationofpredictivemodellingexperiments |