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Transfer Learning-Based Automatic Detection of Coronavirus Disease 2019 (COVID-19) from Chest X-ray Images

BACKGROUND: Coronavirus disease 2019 (COVID-19) is an emerging infectious disease and global health crisis. Although real-time reverse transcription polymerase chain reaction (RT-PCR) is known as the most widely laboratory method to detect the COVID-19 from respiratory specimens. It suffers from sev...

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Autores principales: R., Mohammadi, M., Salehi, H., Ghaffari, A. A, Rohani, R., Reiazi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Shiraz University of Medical Sciences 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7557468/
https://www.ncbi.nlm.nih.gov/pubmed/33134214
http://dx.doi.org/10.31661/jbpe.v0i0.2008-1153
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author R., Mohammadi
M., Salehi
H., Ghaffari
A. A, Rohani
R., Reiazi
author_facet R., Mohammadi
M., Salehi
H., Ghaffari
A. A, Rohani
R., Reiazi
author_sort R., Mohammadi
collection PubMed
description BACKGROUND: Coronavirus disease 2019 (COVID-19) is an emerging infectious disease and global health crisis. Although real-time reverse transcription polymerase chain reaction (RT-PCR) is known as the most widely laboratory method to detect the COVID-19 from respiratory specimens. It suffers from several main drawbacks such as time-consuming, high false-negative results, and limited availability. Therefore, the automatically detect of COVID-19 will be required. OBJECTIVE: This study aimed to use an automated deep convolution neural network based pre-trained transfer models for detection of COVID-19 infection in chest X-rays. MATERIAL AND METHODS: In a retrospective study, we have applied Visual Geometry Group (VGG)-16, VGG-19, MobileNet, and InceptionResNetV2 pre-trained models for detection COVID-19 infection from 348 chest X-ray images. RESULTS: Our proposed models have been trained and tested on a dataset which previously prepared. The all proposed models provide accuracy greater than 90.0%. The pre-trained MobileNet model provides the highest classification performance of automated COVID-19 classification with 99.1% accuracy in comparison with other three proposed models. The plotted area under curve (AUC) of receiver operating characteristics (ROC) of VGG16, VGG19, MobileNet, and InceptionResNetV2 models are 0.92, 0.91, 0.99, and 0.97, respectively. CONCLUSION: The all proposed models were able to perform binary classification with the accuracy more than 90.0% for COVID-19 diagnosis. Our data indicated that the MobileNet can be considered as a promising model to detect COVID-19 cases. In the future, by increasing the number of samples of COVID-19 chest X-rays to the training dataset, the accuracy and robustness of our proposed models increase further.
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spelling pubmed-75574682020-10-30 Transfer Learning-Based Automatic Detection of Coronavirus Disease 2019 (COVID-19) from Chest X-ray Images R., Mohammadi M., Salehi H., Ghaffari A. A, Rohani R., Reiazi J Biomed Phys Eng Original Article BACKGROUND: Coronavirus disease 2019 (COVID-19) is an emerging infectious disease and global health crisis. Although real-time reverse transcription polymerase chain reaction (RT-PCR) is known as the most widely laboratory method to detect the COVID-19 from respiratory specimens. It suffers from several main drawbacks such as time-consuming, high false-negative results, and limited availability. Therefore, the automatically detect of COVID-19 will be required. OBJECTIVE: This study aimed to use an automated deep convolution neural network based pre-trained transfer models for detection of COVID-19 infection in chest X-rays. MATERIAL AND METHODS: In a retrospective study, we have applied Visual Geometry Group (VGG)-16, VGG-19, MobileNet, and InceptionResNetV2 pre-trained models for detection COVID-19 infection from 348 chest X-ray images. RESULTS: Our proposed models have been trained and tested on a dataset which previously prepared. The all proposed models provide accuracy greater than 90.0%. The pre-trained MobileNet model provides the highest classification performance of automated COVID-19 classification with 99.1% accuracy in comparison with other three proposed models. The plotted area under curve (AUC) of receiver operating characteristics (ROC) of VGG16, VGG19, MobileNet, and InceptionResNetV2 models are 0.92, 0.91, 0.99, and 0.97, respectively. CONCLUSION: The all proposed models were able to perform binary classification with the accuracy more than 90.0% for COVID-19 diagnosis. Our data indicated that the MobileNet can be considered as a promising model to detect COVID-19 cases. In the future, by increasing the number of samples of COVID-19 chest X-rays to the training dataset, the accuracy and robustness of our proposed models increase further. Shiraz University of Medical Sciences 2020-10-01 /pmc/articles/PMC7557468/ /pubmed/33134214 http://dx.doi.org/10.31661/jbpe.v0i0.2008-1153 Text en Copyright: © Journal of Biomedical Physics and Engineering http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 Unported License, ( http://creativecommons.org/licenses/by-nc/4.0/ ) which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
R., Mohammadi
M., Salehi
H., Ghaffari
A. A, Rohani
R., Reiazi
Transfer Learning-Based Automatic Detection of Coronavirus Disease 2019 (COVID-19) from Chest X-ray Images
title Transfer Learning-Based Automatic Detection of Coronavirus Disease 2019 (COVID-19) from Chest X-ray Images
title_full Transfer Learning-Based Automatic Detection of Coronavirus Disease 2019 (COVID-19) from Chest X-ray Images
title_fullStr Transfer Learning-Based Automatic Detection of Coronavirus Disease 2019 (COVID-19) from Chest X-ray Images
title_full_unstemmed Transfer Learning-Based Automatic Detection of Coronavirus Disease 2019 (COVID-19) from Chest X-ray Images
title_short Transfer Learning-Based Automatic Detection of Coronavirus Disease 2019 (COVID-19) from Chest X-ray Images
title_sort transfer learning-based automatic detection of coronavirus disease 2019 (covid-19) from chest x-ray images
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7557468/
https://www.ncbi.nlm.nih.gov/pubmed/33134214
http://dx.doi.org/10.31661/jbpe.v0i0.2008-1153
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