Cargando…

Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba

The mitochondrial genome of a species is an essential resource for its effective conservation and phylogenetic studies. In this article, we present sequencing and characterization of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba collected from Khulna region of Bang...

Descripción completa

Detalles Bibliográficos
Autores principales: Islam, Mohammad Nazrul, Sultana, Shirin, Alam, Md. Jobaidul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korea Genome Organization 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7560443/
https://www.ncbi.nlm.nih.gov/pubmed/33017876
http://dx.doi.org/10.5808/GI.2020.18.3.e32
_version_ 1783595088791732224
author Islam, Mohammad Nazrul
Sultana, Shirin
Alam, Md. Jobaidul
author_facet Islam, Mohammad Nazrul
Sultana, Shirin
Alam, Md. Jobaidul
author_sort Islam, Mohammad Nazrul
collection PubMed
description The mitochondrial genome of a species is an essential resource for its effective conservation and phylogenetic studies. In this article, we present sequencing and characterization of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba collected from Khulna region of Bangladesh. The complete mitochondrial genome was 16,597 bp in size, which formed a circular double-stranded DNA molecule containing a total of 37 mitochondrial genes (13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes) with two non-coding regions, an origin of light strand replication (OL) and a displacement loop (D-loop), similar structure with other fishes of Teleostei. The phylogenetic tree demonstrated its close relationship with labeonine fishes. The complete mitogenome of Cirrhinus reba (GenBank no. MN862482) showed 99.96% identity to another haplotype of Cirrhinus reba (AP013325), followed by 90.18% identity with Labeo bata (AP011198).
format Online
Article
Text
id pubmed-7560443
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Korea Genome Organization
record_format MEDLINE/PubMed
spelling pubmed-75604432020-10-21 Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba Islam, Mohammad Nazrul Sultana, Shirin Alam, Md. Jobaidul Genomics Inform Genome Archive The mitochondrial genome of a species is an essential resource for its effective conservation and phylogenetic studies. In this article, we present sequencing and characterization of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba collected from Khulna region of Bangladesh. The complete mitochondrial genome was 16,597 bp in size, which formed a circular double-stranded DNA molecule containing a total of 37 mitochondrial genes (13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes) with two non-coding regions, an origin of light strand replication (OL) and a displacement loop (D-loop), similar structure with other fishes of Teleostei. The phylogenetic tree demonstrated its close relationship with labeonine fishes. The complete mitogenome of Cirrhinus reba (GenBank no. MN862482) showed 99.96% identity to another haplotype of Cirrhinus reba (AP013325), followed by 90.18% identity with Labeo bata (AP011198). Korea Genome Organization 2020-09-10 /pmc/articles/PMC7560443/ /pubmed/33017876 http://dx.doi.org/10.5808/GI.2020.18.3.e32 Text en (c) 2020, Korea Genome Organization (CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genome Archive
Islam, Mohammad Nazrul
Sultana, Shirin
Alam, Md. Jobaidul
Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba
title Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba
title_full Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba
title_fullStr Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba
title_full_unstemmed Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba
title_short Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba
title_sort sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, cirrhinus reba
topic Genome Archive
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7560443/
https://www.ncbi.nlm.nih.gov/pubmed/33017876
http://dx.doi.org/10.5808/GI.2020.18.3.e32
work_keys_str_mv AT islammohammadnazrul sequencingandannotationofthecompletemitochondrialgenomeofathreatenedlabeoninefishcirrhinusreba
AT sultanashirin sequencingandannotationofthecompletemitochondrialgenomeofathreatenedlabeoninefishcirrhinusreba
AT alammdjobaidul sequencingandannotationofthecompletemitochondrialgenomeofathreatenedlabeoninefishcirrhinusreba