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Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba
The mitochondrial genome of a species is an essential resource for its effective conservation and phylogenetic studies. In this article, we present sequencing and characterization of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba collected from Khulna region of Bang...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Korea Genome Organization
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7560443/ https://www.ncbi.nlm.nih.gov/pubmed/33017876 http://dx.doi.org/10.5808/GI.2020.18.3.e32 |
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author | Islam, Mohammad Nazrul Sultana, Shirin Alam, Md. Jobaidul |
author_facet | Islam, Mohammad Nazrul Sultana, Shirin Alam, Md. Jobaidul |
author_sort | Islam, Mohammad Nazrul |
collection | PubMed |
description | The mitochondrial genome of a species is an essential resource for its effective conservation and phylogenetic studies. In this article, we present sequencing and characterization of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba collected from Khulna region of Bangladesh. The complete mitochondrial genome was 16,597 bp in size, which formed a circular double-stranded DNA molecule containing a total of 37 mitochondrial genes (13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes) with two non-coding regions, an origin of light strand replication (OL) and a displacement loop (D-loop), similar structure with other fishes of Teleostei. The phylogenetic tree demonstrated its close relationship with labeonine fishes. The complete mitogenome of Cirrhinus reba (GenBank no. MN862482) showed 99.96% identity to another haplotype of Cirrhinus reba (AP013325), followed by 90.18% identity with Labeo bata (AP011198). |
format | Online Article Text |
id | pubmed-7560443 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Korea Genome Organization |
record_format | MEDLINE/PubMed |
spelling | pubmed-75604432020-10-21 Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba Islam, Mohammad Nazrul Sultana, Shirin Alam, Md. Jobaidul Genomics Inform Genome Archive The mitochondrial genome of a species is an essential resource for its effective conservation and phylogenetic studies. In this article, we present sequencing and characterization of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba collected from Khulna region of Bangladesh. The complete mitochondrial genome was 16,597 bp in size, which formed a circular double-stranded DNA molecule containing a total of 37 mitochondrial genes (13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes) with two non-coding regions, an origin of light strand replication (OL) and a displacement loop (D-loop), similar structure with other fishes of Teleostei. The phylogenetic tree demonstrated its close relationship with labeonine fishes. The complete mitogenome of Cirrhinus reba (GenBank no. MN862482) showed 99.96% identity to another haplotype of Cirrhinus reba (AP013325), followed by 90.18% identity with Labeo bata (AP011198). Korea Genome Organization 2020-09-10 /pmc/articles/PMC7560443/ /pubmed/33017876 http://dx.doi.org/10.5808/GI.2020.18.3.e32 Text en (c) 2020, Korea Genome Organization (CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genome Archive Islam, Mohammad Nazrul Sultana, Shirin Alam, Md. Jobaidul Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba |
title | Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba |
title_full | Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba |
title_fullStr | Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba |
title_full_unstemmed | Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba |
title_short | Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba |
title_sort | sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, cirrhinus reba |
topic | Genome Archive |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7560443/ https://www.ncbi.nlm.nih.gov/pubmed/33017876 http://dx.doi.org/10.5808/GI.2020.18.3.e32 |
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