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A continuation method for spatially discretized models with nonlocal interactions conserving size and shape of cells and lattices
In this paper, we introduce a continuation method for the spatially discretized models, while conserving the size and shape of the cells and lattices. This proposed method is realized using the shift operators and nonlocal operators of convolution types. Through this method and using the shift opera...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7560951/ https://www.ncbi.nlm.nih.gov/pubmed/32959067 http://dx.doi.org/10.1007/s00285-020-01534-6 |
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author | Ei, Shin-Ichiro Ishii, Hiroshi Sato, Makoto Tanaka, Yoshitaro Wang, Miaoxing Yasugi, Tetsuo |
author_facet | Ei, Shin-Ichiro Ishii, Hiroshi Sato, Makoto Tanaka, Yoshitaro Wang, Miaoxing Yasugi, Tetsuo |
author_sort | Ei, Shin-Ichiro |
collection | PubMed |
description | In this paper, we introduce a continuation method for the spatially discretized models, while conserving the size and shape of the cells and lattices. This proposed method is realized using the shift operators and nonlocal operators of convolution types. Through this method and using the shift operator, the nonlinear spatially discretized model on the uniform and nonuniform lattices can be systematically converted into a spatially continuous model; this renders both models point-wisely equivalent. Moreover, by the convolution with suitable kernels, we mollify the shift operator and approximate the spatially discretized models using the nonlocal evolution equations, rendering suitable for the application in both experimental and mathematical analyses. We also demonstrate that this approximation is supported by the singular limit analysis, and that the information of the lattice and cells is expressed in the shift and nonlocal operators. The continuous models designed using our method can successfully replicate the patterns corresponding to those of the original spatially discretized models obtained from the numerical simulations. Furthermore, from the observations of the isotropy of the Delta–Notch signaling system in a developing real fly brain, we propose a radially symmetric kernel for averaging the cell shape using our continuation method. We also apply our method for cell division and proliferation to spatially discretized models of the differentiation wave and describe the discrete models on the sphere surface. Finally, we demonstrate an application of our method in the linear stability analysis of the planar cell polarity model. |
format | Online Article Text |
id | pubmed-7560951 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-75609512020-10-19 A continuation method for spatially discretized models with nonlocal interactions conserving size and shape of cells and lattices Ei, Shin-Ichiro Ishii, Hiroshi Sato, Makoto Tanaka, Yoshitaro Wang, Miaoxing Yasugi, Tetsuo J Math Biol Article In this paper, we introduce a continuation method for the spatially discretized models, while conserving the size and shape of the cells and lattices. This proposed method is realized using the shift operators and nonlocal operators of convolution types. Through this method and using the shift operator, the nonlinear spatially discretized model on the uniform and nonuniform lattices can be systematically converted into a spatially continuous model; this renders both models point-wisely equivalent. Moreover, by the convolution with suitable kernels, we mollify the shift operator and approximate the spatially discretized models using the nonlocal evolution equations, rendering suitable for the application in both experimental and mathematical analyses. We also demonstrate that this approximation is supported by the singular limit analysis, and that the information of the lattice and cells is expressed in the shift and nonlocal operators. The continuous models designed using our method can successfully replicate the patterns corresponding to those of the original spatially discretized models obtained from the numerical simulations. Furthermore, from the observations of the isotropy of the Delta–Notch signaling system in a developing real fly brain, we propose a radially symmetric kernel for averaging the cell shape using our continuation method. We also apply our method for cell division and proliferation to spatially discretized models of the differentiation wave and describe the discrete models on the sphere surface. Finally, we demonstrate an application of our method in the linear stability analysis of the planar cell polarity model. Springer Berlin Heidelberg 2020-09-21 2020 /pmc/articles/PMC7560951/ /pubmed/32959067 http://dx.doi.org/10.1007/s00285-020-01534-6 Text en © The Author(s) 2020 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Ei, Shin-Ichiro Ishii, Hiroshi Sato, Makoto Tanaka, Yoshitaro Wang, Miaoxing Yasugi, Tetsuo A continuation method for spatially discretized models with nonlocal interactions conserving size and shape of cells and lattices |
title | A continuation method for spatially discretized models with nonlocal interactions conserving size and shape of cells and lattices |
title_full | A continuation method for spatially discretized models with nonlocal interactions conserving size and shape of cells and lattices |
title_fullStr | A continuation method for spatially discretized models with nonlocal interactions conserving size and shape of cells and lattices |
title_full_unstemmed | A continuation method for spatially discretized models with nonlocal interactions conserving size and shape of cells and lattices |
title_short | A continuation method for spatially discretized models with nonlocal interactions conserving size and shape of cells and lattices |
title_sort | continuation method for spatially discretized models with nonlocal interactions conserving size and shape of cells and lattices |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7560951/ https://www.ncbi.nlm.nih.gov/pubmed/32959067 http://dx.doi.org/10.1007/s00285-020-01534-6 |
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