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IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis

During these days of global emergency for the COVID-19 disease outbreak, there is an urgency to share reliable information able to help worldwide life scientists to get better insights and make sense of the large amount of data currently available. In this study we used the results presented in [1]...

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Detalles Bibliográficos
Autores principales: Politano, Gianfranco, Benso, Alfredo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7561109/
https://www.ncbi.nlm.nih.gov/pubmed/32997660
http://dx.doi.org/10.1371/journal.pcbi.1008238
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author Politano, Gianfranco
Benso, Alfredo
author_facet Politano, Gianfranco
Benso, Alfredo
author_sort Politano, Gianfranco
collection PubMed
description During these days of global emergency for the COVID-19 disease outbreak, there is an urgency to share reliable information able to help worldwide life scientists to get better insights and make sense of the large amount of data currently available. In this study we used the results presented in [1] to perform two different Systems Biology analyses on the HCoV-host interactome. In the first one, we reconstructed the interactome of the HCoV-host proteins, integrating it with highly reliable miRNA and drug interactions information. We then added the IL-6 gene, identified in recent publications [2] as heavily involved in the COVID-19 progression and, interestingly, we identified several interactions with the reconstructed interactome. In the second analysis, we performed a Gene Ontology and a Pathways enrichment analysis on the full set of the HCoV-host interactome proteins and on the ones belonging to a significantly dense cluster of interacting proteins identified in the first analysis. Results of the two analyses provide a compact but comprehensive glance on some of the current state-of-the-art regulations, GO, and pathways involved in the HCoV-host interactome, and that could support all scientists currently focusing on SARS-CoV-2 research.
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spelling pubmed-75611092020-10-21 IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis Politano, Gianfranco Benso, Alfredo PLoS Comput Biol Research Article During these days of global emergency for the COVID-19 disease outbreak, there is an urgency to share reliable information able to help worldwide life scientists to get better insights and make sense of the large amount of data currently available. In this study we used the results presented in [1] to perform two different Systems Biology analyses on the HCoV-host interactome. In the first one, we reconstructed the interactome of the HCoV-host proteins, integrating it with highly reliable miRNA and drug interactions information. We then added the IL-6 gene, identified in recent publications [2] as heavily involved in the COVID-19 progression and, interestingly, we identified several interactions with the reconstructed interactome. In the second analysis, we performed a Gene Ontology and a Pathways enrichment analysis on the full set of the HCoV-host interactome proteins and on the ones belonging to a significantly dense cluster of interacting proteins identified in the first analysis. Results of the two analyses provide a compact but comprehensive glance on some of the current state-of-the-art regulations, GO, and pathways involved in the HCoV-host interactome, and that could support all scientists currently focusing on SARS-CoV-2 research. Public Library of Science 2020-09-30 /pmc/articles/PMC7561109/ /pubmed/32997660 http://dx.doi.org/10.1371/journal.pcbi.1008238 Text en © 2020 Politano, Benso http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Politano, Gianfranco
Benso, Alfredo
IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis
title IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis
title_full IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis
title_fullStr IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis
title_full_unstemmed IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis
title_short IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis
title_sort il6-mediated hcov-host interactome regulatory network and go/pathway enrichment analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7561109/
https://www.ncbi.nlm.nih.gov/pubmed/32997660
http://dx.doi.org/10.1371/journal.pcbi.1008238
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