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Clustering and classification of virus sequence through music communication protocol and wavelet transform

The coronavirus pandemic became a major risk in global public health. The outbreak is caused by SARS-CoV-2, a member of the coronavirus family. Though the images of the virus are familiar to us, in the present study, an attempt is made to hear the coronavirus by translating its protein spike into au...

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Detalles Bibliográficos
Autores principales: Paul, Tirthankar, Vainio, Seppo, Roning, Juha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7561519/
https://www.ncbi.nlm.nih.gov/pubmed/33069829
http://dx.doi.org/10.1016/j.ygeno.2020.10.009
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author Paul, Tirthankar
Vainio, Seppo
Roning, Juha
author_facet Paul, Tirthankar
Vainio, Seppo
Roning, Juha
author_sort Paul, Tirthankar
collection PubMed
description The coronavirus pandemic became a major risk in global public health. The outbreak is caused by SARS-CoV-2, a member of the coronavirus family. Though the images of the virus are familiar to us, in the present study, an attempt is made to hear the coronavirus by translating its protein spike into audio sequences. The musical features such as pitch, timbre, volume and duration are mapped based on the coronavirus protein sequence. Three different viruses Influenza, Ebola and Coronavirus were studied and compared through their auditory virus sequences by implementing Haar wavelet transform. The sonification of the coronavirus benefits in understanding the protein structures by enhancing the hidden features. Further, it makes a clear difference in the representation of coronavirus compared with other viruses, which will help in various research works related to virus sequence. This evolves as a simplified and novel way of representing the conventional computational methods.
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spelling pubmed-75615192020-10-16 Clustering and classification of virus sequence through music communication protocol and wavelet transform Paul, Tirthankar Vainio, Seppo Roning, Juha Genomics Original Article The coronavirus pandemic became a major risk in global public health. The outbreak is caused by SARS-CoV-2, a member of the coronavirus family. Though the images of the virus are familiar to us, in the present study, an attempt is made to hear the coronavirus by translating its protein spike into audio sequences. The musical features such as pitch, timbre, volume and duration are mapped based on the coronavirus protein sequence. Three different viruses Influenza, Ebola and Coronavirus were studied and compared through their auditory virus sequences by implementing Haar wavelet transform. The sonification of the coronavirus benefits in understanding the protein structures by enhancing the hidden features. Further, it makes a clear difference in the representation of coronavirus compared with other viruses, which will help in various research works related to virus sequence. This evolves as a simplified and novel way of representing the conventional computational methods. Elsevier Inc. 2021-01 2020-10-16 /pmc/articles/PMC7561519/ /pubmed/33069829 http://dx.doi.org/10.1016/j.ygeno.2020.10.009 Text en © 2020 Elsevier Inc. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Original Article
Paul, Tirthankar
Vainio, Seppo
Roning, Juha
Clustering and classification of virus sequence through music communication protocol and wavelet transform
title Clustering and classification of virus sequence through music communication protocol and wavelet transform
title_full Clustering and classification of virus sequence through music communication protocol and wavelet transform
title_fullStr Clustering and classification of virus sequence through music communication protocol and wavelet transform
title_full_unstemmed Clustering and classification of virus sequence through music communication protocol and wavelet transform
title_short Clustering and classification of virus sequence through music communication protocol and wavelet transform
title_sort clustering and classification of virus sequence through music communication protocol and wavelet transform
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7561519/
https://www.ncbi.nlm.nih.gov/pubmed/33069829
http://dx.doi.org/10.1016/j.ygeno.2020.10.009
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