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Seasonal synchronization of foodborne outbreaks in the United States, 1996–2017
Modern food systems represent complex dynamic networks vulnerable to foodborne infectious outbreaks difficult to track and control. Seasonal co-occurrences (alignment of seasonal peaks) and synchronization (similarity of seasonal patterns) of infections are noted, yet rarely explored due to their co...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7562704/ https://www.ncbi.nlm.nih.gov/pubmed/33060743 http://dx.doi.org/10.1038/s41598-020-74435-9 |
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author | Simpson, Ryan B. Zhou, Bingjie Naumova, Elena N. |
author_facet | Simpson, Ryan B. Zhou, Bingjie Naumova, Elena N. |
author_sort | Simpson, Ryan B. |
collection | PubMed |
description | Modern food systems represent complex dynamic networks vulnerable to foodborne infectious outbreaks difficult to track and control. Seasonal co-occurrences (alignment of seasonal peaks) and synchronization (similarity of seasonal patterns) of infections are noted, yet rarely explored due to their complexity and methodological limitations. We proposed a systematic approach to evaluate the co-occurrence of seasonal peaks using a combination of L-moments, seasonality characteristics such as the timing (phase) and intensity (amplitude) of peaks, and three metrics of serial, phase-phase, and phase-amplitude synchronization. We used public records on counts of nine foodborne infections abstracted from CDC’s FoodNet Fast online platform for the US and ten representative states from 1996 to 2017 (264 months). Based on annualized and trend-adjusted Negative Binomial Harmonic Regression (NBHR) models augmented with the δ-method, we determined that seasonal peaks of Campylobacter, Salmonella, and Shiga toxin-producing Escherichia Coli (STEC) were tightly clustered in late-July at the national and state levels. Phase-phase synchronization was observed between Cryptosporidium and Shigella, Listeria, and Salmonella (ρ = 0.51, 0.51, 0.46; p < 0.04). Later peak timing of STEC was associated with greater amplitude nationally (ρ = 0.50, p = 0.02) indicating phase-amplitude synchronization. Understanding of disease seasonal synchronization is essential for developing reliable outbreak forecasts and informing stakeholders on mitigation and preventive measures. |
format | Online Article Text |
id | pubmed-7562704 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-75627042020-10-19 Seasonal synchronization of foodborne outbreaks in the United States, 1996–2017 Simpson, Ryan B. Zhou, Bingjie Naumova, Elena N. Sci Rep Article Modern food systems represent complex dynamic networks vulnerable to foodborne infectious outbreaks difficult to track and control. Seasonal co-occurrences (alignment of seasonal peaks) and synchronization (similarity of seasonal patterns) of infections are noted, yet rarely explored due to their complexity and methodological limitations. We proposed a systematic approach to evaluate the co-occurrence of seasonal peaks using a combination of L-moments, seasonality characteristics such as the timing (phase) and intensity (amplitude) of peaks, and three metrics of serial, phase-phase, and phase-amplitude synchronization. We used public records on counts of nine foodborne infections abstracted from CDC’s FoodNet Fast online platform for the US and ten representative states from 1996 to 2017 (264 months). Based on annualized and trend-adjusted Negative Binomial Harmonic Regression (NBHR) models augmented with the δ-method, we determined that seasonal peaks of Campylobacter, Salmonella, and Shiga toxin-producing Escherichia Coli (STEC) were tightly clustered in late-July at the national and state levels. Phase-phase synchronization was observed between Cryptosporidium and Shigella, Listeria, and Salmonella (ρ = 0.51, 0.51, 0.46; p < 0.04). Later peak timing of STEC was associated with greater amplitude nationally (ρ = 0.50, p = 0.02) indicating phase-amplitude synchronization. Understanding of disease seasonal synchronization is essential for developing reliable outbreak forecasts and informing stakeholders on mitigation and preventive measures. Nature Publishing Group UK 2020-10-15 /pmc/articles/PMC7562704/ /pubmed/33060743 http://dx.doi.org/10.1038/s41598-020-74435-9 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Simpson, Ryan B. Zhou, Bingjie Naumova, Elena N. Seasonal synchronization of foodborne outbreaks in the United States, 1996–2017 |
title | Seasonal synchronization of foodborne outbreaks in the United States, 1996–2017 |
title_full | Seasonal synchronization of foodborne outbreaks in the United States, 1996–2017 |
title_fullStr | Seasonal synchronization of foodborne outbreaks in the United States, 1996–2017 |
title_full_unstemmed | Seasonal synchronization of foodborne outbreaks in the United States, 1996–2017 |
title_short | Seasonal synchronization of foodborne outbreaks in the United States, 1996–2017 |
title_sort | seasonal synchronization of foodborne outbreaks in the united states, 1996–2017 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7562704/ https://www.ncbi.nlm.nih.gov/pubmed/33060743 http://dx.doi.org/10.1038/s41598-020-74435-9 |
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