Cargando…

Pan-cancer driver copy number alterations identified by joint expression/CNA data analysis

Analysis of large gene expression datasets from biopsies of cancer patients can identify co-expression signatures representing particular biomolecular events in cancer. Some of these signatures involve genomically co-localized genes resulting from the presence of copy number alterations (CNAs), for...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Gaojianyong, Anastassiou, Dimitris
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7566486/ https://www.ncbi.nlm.nih.gov/pubmed/33057153 http://dx.doi.org/10.1038/s41598-020-74276-6

Ejemplares similares

Four-copy number alteration (CNA)-related lncRNA prognostic signature for liver cancer
por: Cheng, Zhenyun, et al.
Publicado: (2022)

VCF2CNA: A tool for efficiently detecting copy-number alterations in VCF genotype data and tumor purity
por: Putnam, Daniel K., et al.
Publicado: (2019)

CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data
por: Yu, Zhenhua, et al.
Publicado: (2016)

LiquidCNA: Tracking subclonal evolution from longitudinal liquid biopsies using somatic copy number alterations
por: Lakatos, Eszter, et al.
Publicado: (2021)

Stratification of clear cell renal cell carcinoma (ccRCC) genomes by gene-directed copy number alteration (CNA) analysis
por: Thiesen, H.-J., et al.
Publicado: (2017)

seqCNA: an R package for DNA copy number analysis in cancer using high-throughput sequencing
por: Mosen-Ansorena, David, et al.
Publicado: (2014)

Pan-cancer patterns of somatic copy-number alteration
por: Zack, Travis I., et al.
Publicado: (2013)

Impact of CNA on AML prognosis
por: Gonzales, Fanny, et al.
Publicado: (2017)

BiTSC (2): Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data
por: Chen, Ziwei, et al.
Publicado: (2022)

Identifying the driver miRNAs with somatic copy number alterations driving dysregulated ceRNA networks in cancers
por: Dou, Renjie, et al.
Publicado: (2023)

Copy number alteration features in pan-cancer homologous recombination deficiency prediction and biology
por: Yao, Huizi, et al.
Publicado: (2023)

RUBIC identifies driver genes by detecting recurrent DNA copy number breaks
por: van Dyk, Ewald, et al.
Publicado: (2016)

Comparative Analysis of Methods for Identifying Recurrent Copy Number Alterations in Cancer
por: Yuan, Xiguo, et al.
Publicado: (2012)

Integrative analysis of copy number and transcriptional expression profiles in esophageal cancer to identify a novel driver gene for therapy
por: Dong, Gaochao, et al.
Publicado: (2017)

CNA Certified Nursing Assistant Exam Cram
por: Whitenton, Linda
Publicado: (2017)

C.N.A. Nurses and the "Roll of Merit"
por: Millington, A. M. T.
Publicado: (1917)

Identification of driver copy number alterations in diverse cancer types and application in drug repositioning
por: Zhou, Wenbin, et al.
Publicado: (2017)

Comparative Oncogenomic Analysis of Copy Number Alterations in Human and Zebrafish Tumors Enables Cancer Driver Discovery
por: Zhang, GuangJun, et al.
Publicado: (2013)

Gliosarcoma: The Distinct Genomic Alterations Identified by Comprehensive Analysis of Copy Number Variations
por: Cheng, Chuan-dong, et al.
Publicado: (2022)

MethCNA: a database for integrating genomic and epigenomic data in human cancer
por: Deng, Gaofeng, et al.
Publicado: (2018)

Robust genomic copy number predictor of pan cancer metastasis
por: Pearlman, Alexander, et al.
Publicado: (2018)

Characterizing HDAC Pathway Copy Number Variation in Pan-Cancer
por: Yang, Shuming, et al.
Publicado: (2022)

Dissecting Molecular Heterogeneity of Circulating Tumor Cells (CTCs) from Metastatic Breast Cancer Patients through Copy Number Aberration (CNA) and Single Nucleotide Variant (SNV) Single Cell Analysis
por: Rossi, Tania, et al.
Publicado: (2022)

Tumor copy number alteration burden is a pan-cancer prognostic factor associated with recurrence and death
por: Hieronymus, Haley, et al.
Publicado: (2018)

CnAβ1 shifts cardiac metabolism
por: Gomez-Salinero, Jesus M., et al.
Publicado: (2019)

epiAneufinder identifies copy number alterations from single-cell ATAC-seq data
por: Ramakrishnan, Akshaya, et al.
Publicado: (2023)

Functional profiling and gene expression analysis of chromosomal copy number alterations
por: Conde, Lucía, et al.
Publicado: (2007)

Copy-number-variation and copy-number-alteration region detection by cumulative plots
por: Li, Wentian, et al.
Publicado: (2009)

Combined analysis of genome-wide expression and copy number profiles to identify key altered genomic regions in cancer
por: Fontanillo, Celia, et al.
Publicado: (2012)

Estimation of Copy Number Alterations from Exome Sequencing Data
por: Valdés-Mas, Rafael, et al.
Publicado: (2012)

APOBEC Mutagenesis and Copy-Number Alterations Are Drivers of Proteogenomic Tumor Evolution and Heterogeneity in Metastatic Thoracic Tumors
por: Roper, Nitin, et al.
Publicado: (2019)

Copy number variation is highly correlated with differential gene expression: a pan-cancer study
por: Shao, Xin, et al.
Publicado: (2019)

Pan-Cancer Analysis Reveals Differential Susceptibility of Bidirectional Gene Promoters to DNA Methylation, Somatic Mutations, and Copy Number Alterations
por: Thompson, Jeffrey A., et al.
Publicado: (2018)

Advanced analysis and visualization of gene copy number and expression data
por: Autio, Reija, et al.
Publicado: (2009)

Specification for control and interlock of septa for the synchrotron accelerator CNA project
por: Balhan, B, et al.
Publicado: (2003)

The complete moment convergence for CNA random vectors in Hilbert spaces
por: Ko, Mi-Hwa
Publicado: (2017)

Integrated analysis of gene expression and copy number identified potential cancer driver genes with amplification-dependent overexpression in 1,454 solid tumors
por: Ohshima, Keiichi, et al.
Publicado: (2017)

Identifying In-Trans Process Associated Genes in Breast Cancer by Integrated Analysis of Copy Number and Expression Data
por: Aure, Miriam Ragle, et al.
Publicado: (2013)

Functional Copy-Number Alterations in Cancer
por: Taylor, Barry S., et al.
Publicado: (2008)

Exploratory Analysis of the Copy Number Alterations in Glioblastoma Multiforme
por: Freire, Pablo, et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_3t968vs4839o0i75vtuor80eal