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Convergent learning–based model for leukemia classification from gene expression

Microarray data analysis is a major challenging field of research in recent days. Machine learning–based automated gene data classification is an essential aspect for diagnosis of gene related any malfunctions and diseases. As the size of the data is very large, it is essential to design a suitable...

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Autores principales: Mallick, Pradeep Kumar, Mohapatra, Saumendra Kumar, Chae, Gyoo-Soo, Mohanty, Mihir Narayan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer London 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7567412/
https://www.ncbi.nlm.nih.gov/pubmed/33100943
http://dx.doi.org/10.1007/s00779-020-01467-3
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author Mallick, Pradeep Kumar
Mohapatra, Saumendra Kumar
Chae, Gyoo-Soo
Mohanty, Mihir Narayan
author_facet Mallick, Pradeep Kumar
Mohapatra, Saumendra Kumar
Chae, Gyoo-Soo
Mohanty, Mihir Narayan
author_sort Mallick, Pradeep Kumar
collection PubMed
description Microarray data analysis is a major challenging field of research in recent days. Machine learning–based automated gene data classification is an essential aspect for diagnosis of gene related any malfunctions and diseases. As the size of the data is very large, it is essential to design a suitable classifier that can process huge amount of data. Deep learning is one of the advanced machine learning techniques to mitigate these types of problems. Due the presence of more number of hidden layers, it can easily handle the big amount of data. We have presented a method of classification to understand the convergence of training deep neural network (DNN). The assumptions are taken as the inputs do not degenerate and the network is over-parameterized. Also the number of hidden neurons is sufficiently large. Authors in this piece of work have used DNN for classifying the gene expressions data. The dataset used in the work contains the bone marrow expressions of 72 leukemia patients. A five-layer DNN classifier is designed for classifying acute lymphocyte (ALL) and acute myelocytic (AML) samples. The network is trained with 80% data and rest 20% data is considered for validation purpose. Proposed DNN classifier is providing a satisfactory result as compared to other classifiers. Two types of leukemia are classified with 98.2% accuracy, 96.59% sensitivity, and 97.9% specificity. The different types of computer-aided analyses of genes can be helpful to genetic and virology researchers as well in future generation.
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spelling pubmed-75674122020-10-19 Convergent learning–based model for leukemia classification from gene expression Mallick, Pradeep Kumar Mohapatra, Saumendra Kumar Chae, Gyoo-Soo Mohanty, Mihir Narayan Pers Ubiquitous Comput Original Article Microarray data analysis is a major challenging field of research in recent days. Machine learning–based automated gene data classification is an essential aspect for diagnosis of gene related any malfunctions and diseases. As the size of the data is very large, it is essential to design a suitable classifier that can process huge amount of data. Deep learning is one of the advanced machine learning techniques to mitigate these types of problems. Due the presence of more number of hidden layers, it can easily handle the big amount of data. We have presented a method of classification to understand the convergence of training deep neural network (DNN). The assumptions are taken as the inputs do not degenerate and the network is over-parameterized. Also the number of hidden neurons is sufficiently large. Authors in this piece of work have used DNN for classifying the gene expressions data. The dataset used in the work contains the bone marrow expressions of 72 leukemia patients. A five-layer DNN classifier is designed for classifying acute lymphocyte (ALL) and acute myelocytic (AML) samples. The network is trained with 80% data and rest 20% data is considered for validation purpose. Proposed DNN classifier is providing a satisfactory result as compared to other classifiers. Two types of leukemia are classified with 98.2% accuracy, 96.59% sensitivity, and 97.9% specificity. The different types of computer-aided analyses of genes can be helpful to genetic and virology researchers as well in future generation. Springer London 2020-10-16 2023 /pmc/articles/PMC7567412/ /pubmed/33100943 http://dx.doi.org/10.1007/s00779-020-01467-3 Text en © Springer-Verlag London Ltd., part of Springer Nature 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Mallick, Pradeep Kumar
Mohapatra, Saumendra Kumar
Chae, Gyoo-Soo
Mohanty, Mihir Narayan
Convergent learning–based model for leukemia classification from gene expression
title Convergent learning–based model for leukemia classification from gene expression
title_full Convergent learning–based model for leukemia classification from gene expression
title_fullStr Convergent learning–based model for leukemia classification from gene expression
title_full_unstemmed Convergent learning–based model for leukemia classification from gene expression
title_short Convergent learning–based model for leukemia classification from gene expression
title_sort convergent learning–based model for leukemia classification from gene expression
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7567412/
https://www.ncbi.nlm.nih.gov/pubmed/33100943
http://dx.doi.org/10.1007/s00779-020-01467-3
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