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Photon-directed multiplexed enzymatic DNA synthesis for molecular digital data storage

New storage technologies are needed to keep up with the global demands of data generation. DNA is an ideal storage medium due to its stability, information density and ease-of-readout with advanced sequencing techniques. However, progress in writing DNA is stifled by the continued reliance on chemic...

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Autores principales: Lee, Howon, Wiegand, Daniel J., Griswold, Kettner, Punthambaker, Sukanya, Chun, Honggu, Kohman, Richie E., Church, George M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7567835/
https://www.ncbi.nlm.nih.gov/pubmed/33067441
http://dx.doi.org/10.1038/s41467-020-18681-5
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author Lee, Howon
Wiegand, Daniel J.
Griswold, Kettner
Punthambaker, Sukanya
Chun, Honggu
Kohman, Richie E.
Church, George M.
author_facet Lee, Howon
Wiegand, Daniel J.
Griswold, Kettner
Punthambaker, Sukanya
Chun, Honggu
Kohman, Richie E.
Church, George M.
author_sort Lee, Howon
collection PubMed
description New storage technologies are needed to keep up with the global demands of data generation. DNA is an ideal storage medium due to its stability, information density and ease-of-readout with advanced sequencing techniques. However, progress in writing DNA is stifled by the continued reliance on chemical synthesis methods. The enzymatic synthesis of DNA is a promising alternative, but thus far has not been well demonstrated in a parallelized manner. Here, we report a multiplexed enzymatic DNA synthesis method using maskless photolithography. Rapid uncaging of Co(2+) ions by patterned UV light activates Terminal deoxynucleotidyl Transferase (TdT) for spatially-selective synthesis on an array surface. Spontaneous quenching of reactions by the diffusion of excess caging molecules confines synthesis to light patterns and controls the extension length. We show that our multiplexed synthesis method can be used to store digital data by encoding 12 unique DNA oligonucleotide sequences with video game music, which is equivalent to 84 trits or 110 bits of data.
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spelling pubmed-75678352020-10-19 Photon-directed multiplexed enzymatic DNA synthesis for molecular digital data storage Lee, Howon Wiegand, Daniel J. Griswold, Kettner Punthambaker, Sukanya Chun, Honggu Kohman, Richie E. Church, George M. Nat Commun Article New storage technologies are needed to keep up with the global demands of data generation. DNA is an ideal storage medium due to its stability, information density and ease-of-readout with advanced sequencing techniques. However, progress in writing DNA is stifled by the continued reliance on chemical synthesis methods. The enzymatic synthesis of DNA is a promising alternative, but thus far has not been well demonstrated in a parallelized manner. Here, we report a multiplexed enzymatic DNA synthesis method using maskless photolithography. Rapid uncaging of Co(2+) ions by patterned UV light activates Terminal deoxynucleotidyl Transferase (TdT) for spatially-selective synthesis on an array surface. Spontaneous quenching of reactions by the diffusion of excess caging molecules confines synthesis to light patterns and controls the extension length. We show that our multiplexed synthesis method can be used to store digital data by encoding 12 unique DNA oligonucleotide sequences with video game music, which is equivalent to 84 trits or 110 bits of data. Nature Publishing Group UK 2020-10-16 /pmc/articles/PMC7567835/ /pubmed/33067441 http://dx.doi.org/10.1038/s41467-020-18681-5 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Lee, Howon
Wiegand, Daniel J.
Griswold, Kettner
Punthambaker, Sukanya
Chun, Honggu
Kohman, Richie E.
Church, George M.
Photon-directed multiplexed enzymatic DNA synthesis for molecular digital data storage
title Photon-directed multiplexed enzymatic DNA synthesis for molecular digital data storage
title_full Photon-directed multiplexed enzymatic DNA synthesis for molecular digital data storage
title_fullStr Photon-directed multiplexed enzymatic DNA synthesis for molecular digital data storage
title_full_unstemmed Photon-directed multiplexed enzymatic DNA synthesis for molecular digital data storage
title_short Photon-directed multiplexed enzymatic DNA synthesis for molecular digital data storage
title_sort photon-directed multiplexed enzymatic dna synthesis for molecular digital data storage
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7567835/
https://www.ncbi.nlm.nih.gov/pubmed/33067441
http://dx.doi.org/10.1038/s41467-020-18681-5
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