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Automated diagnosis of COVID-19 with limited posteroanterior chest X-ray images using fine-tuned deep neural networks

The novel coronavirus 2019 (COVID-19) is a respiratory syndrome that resembles pneumonia. The current diagnostic procedure of COVID-19 follows reverse-transcriptase polymerase chain reaction (RT-PCR) based approach which however is less sensitive to identify the virus at the initial stage. Hence, a...

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Autores principales: Punn, Narinder Singh, Agarwal, Sonali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7568031/
https://www.ncbi.nlm.nih.gov/pubmed/34764554
http://dx.doi.org/10.1007/s10489-020-01900-3
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author Punn, Narinder Singh
Agarwal, Sonali
author_facet Punn, Narinder Singh
Agarwal, Sonali
author_sort Punn, Narinder Singh
collection PubMed
description The novel coronavirus 2019 (COVID-19) is a respiratory syndrome that resembles pneumonia. The current diagnostic procedure of COVID-19 follows reverse-transcriptase polymerase chain reaction (RT-PCR) based approach which however is less sensitive to identify the virus at the initial stage. Hence, a more robust and alternate diagnosis technique is desirable. Recently, with the release of publicly available datasets of corona positive patients comprising of computed tomography (CT) and chest X-ray (CXR) imaging; scientists, researchers and healthcare experts are contributing for faster and automated diagnosis of COVID-19 by identifying pulmonary infections using deep learning approaches to achieve better cure and treatment. These datasets have limited samples concerned with the positive COVID-19 cases, which raise the challenge for unbiased learning. Following from this context, this article presents the random oversampling and weighted class loss function approach for unbiased fine-tuned learning (transfer learning) in various state-of-the-art deep learning approaches such as baseline ResNet, Inception-v3, Inception ResNet-v2, DenseNet169, and NASNetLarge to perform binary classification (as normal and COVID-19 cases) and also multi-class classification (as COVID-19, pneumonia, and normal case) of posteroanterior CXR images. Accuracy, precision, recall, loss, and area under the curve (AUC) are utilized to evaluate the performance of the models. Considering the experimental results, the performance of each model is scenario dependent; however, NASNetLarge displayed better scores in contrast to other architectures, which is further compared with other recently proposed approaches. This article also added the visual explanation to illustrate the basis of model classification and perception of COVID-19 in CXR images.
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spelling pubmed-75680312020-10-19 Automated diagnosis of COVID-19 with limited posteroanterior chest X-ray images using fine-tuned deep neural networks Punn, Narinder Singh Agarwal, Sonali Appl Intell (Dordr) Article The novel coronavirus 2019 (COVID-19) is a respiratory syndrome that resembles pneumonia. The current diagnostic procedure of COVID-19 follows reverse-transcriptase polymerase chain reaction (RT-PCR) based approach which however is less sensitive to identify the virus at the initial stage. Hence, a more robust and alternate diagnosis technique is desirable. Recently, with the release of publicly available datasets of corona positive patients comprising of computed tomography (CT) and chest X-ray (CXR) imaging; scientists, researchers and healthcare experts are contributing for faster and automated diagnosis of COVID-19 by identifying pulmonary infections using deep learning approaches to achieve better cure and treatment. These datasets have limited samples concerned with the positive COVID-19 cases, which raise the challenge for unbiased learning. Following from this context, this article presents the random oversampling and weighted class loss function approach for unbiased fine-tuned learning (transfer learning) in various state-of-the-art deep learning approaches such as baseline ResNet, Inception-v3, Inception ResNet-v2, DenseNet169, and NASNetLarge to perform binary classification (as normal and COVID-19 cases) and also multi-class classification (as COVID-19, pneumonia, and normal case) of posteroanterior CXR images. Accuracy, precision, recall, loss, and area under the curve (AUC) are utilized to evaluate the performance of the models. Considering the experimental results, the performance of each model is scenario dependent; however, NASNetLarge displayed better scores in contrast to other architectures, which is further compared with other recently proposed approaches. This article also added the visual explanation to illustrate the basis of model classification and perception of COVID-19 in CXR images. Springer US 2020-10-17 2021 /pmc/articles/PMC7568031/ /pubmed/34764554 http://dx.doi.org/10.1007/s10489-020-01900-3 Text en © Springer Science+Business Media, LLC, part of Springer Nature 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Punn, Narinder Singh
Agarwal, Sonali
Automated diagnosis of COVID-19 with limited posteroanterior chest X-ray images using fine-tuned deep neural networks
title Automated diagnosis of COVID-19 with limited posteroanterior chest X-ray images using fine-tuned deep neural networks
title_full Automated diagnosis of COVID-19 with limited posteroanterior chest X-ray images using fine-tuned deep neural networks
title_fullStr Automated diagnosis of COVID-19 with limited posteroanterior chest X-ray images using fine-tuned deep neural networks
title_full_unstemmed Automated diagnosis of COVID-19 with limited posteroanterior chest X-ray images using fine-tuned deep neural networks
title_short Automated diagnosis of COVID-19 with limited posteroanterior chest X-ray images using fine-tuned deep neural networks
title_sort automated diagnosis of covid-19 with limited posteroanterior chest x-ray images using fine-tuned deep neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7568031/
https://www.ncbi.nlm.nih.gov/pubmed/34764554
http://dx.doi.org/10.1007/s10489-020-01900-3
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