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Network analysis of autistic disease comorbidities in Chinese children based on ICD-10 codes

BACKGROUND: Autism is a lifelong disability associated with several comorbidities that confound diagnosis and treatment. A better understanding of these comorbidities would facilitate diagnosis and improve treatments. Our aim was to improve the detection of comorbid diseases associated with autism....

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Autores principales: Li, Xiaojun, Liu, Guangjian, Chen, Wenxiong, Bi, Zhisheng, Liang, Huiying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7568351/
https://www.ncbi.nlm.nih.gov/pubmed/33069223
http://dx.doi.org/10.1186/s12911-020-01282-z
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author Li, Xiaojun
Liu, Guangjian
Chen, Wenxiong
Bi, Zhisheng
Liang, Huiying
author_facet Li, Xiaojun
Liu, Guangjian
Chen, Wenxiong
Bi, Zhisheng
Liang, Huiying
author_sort Li, Xiaojun
collection PubMed
description BACKGROUND: Autism is a lifelong disability associated with several comorbidities that confound diagnosis and treatment. A better understanding of these comorbidities would facilitate diagnosis and improve treatments. Our aim was to improve the detection of comorbid diseases associated with autism. METHODS: We used an FP-growth algorithm to retrospectively infer disease associations using 1488 patients with autism treated at the Guangzhou Women and Children’s Medical Center. The disease network was established using Cytoscape 3.7. The rules were internally validated by 10-fold cross-validation. All rules were further verified using the Columbia Open Health Data (COHD) and by literature search. RESULTS: We found 148 comorbid diseases including intellectual disability, developmental speech disorder, and epilepsy. The network comprised of 76 nodes and 178 directed links. 158 links were confirmed by literature search and 105 links were validated by COHD. Furthermore, we identified 14 links not previously reported. CONCLUSION: We demonstrate that the FP-growth algorithm can detect comorbid disease patterns, including novel ones, in patients with autism.
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spelling pubmed-75683512020-10-20 Network analysis of autistic disease comorbidities in Chinese children based on ICD-10 codes Li, Xiaojun Liu, Guangjian Chen, Wenxiong Bi, Zhisheng Liang, Huiying BMC Med Inform Decis Mak Research Article BACKGROUND: Autism is a lifelong disability associated with several comorbidities that confound diagnosis and treatment. A better understanding of these comorbidities would facilitate diagnosis and improve treatments. Our aim was to improve the detection of comorbid diseases associated with autism. METHODS: We used an FP-growth algorithm to retrospectively infer disease associations using 1488 patients with autism treated at the Guangzhou Women and Children’s Medical Center. The disease network was established using Cytoscape 3.7. The rules were internally validated by 10-fold cross-validation. All rules were further verified using the Columbia Open Health Data (COHD) and by literature search. RESULTS: We found 148 comorbid diseases including intellectual disability, developmental speech disorder, and epilepsy. The network comprised of 76 nodes and 178 directed links. 158 links were confirmed by literature search and 105 links were validated by COHD. Furthermore, we identified 14 links not previously reported. CONCLUSION: We demonstrate that the FP-growth algorithm can detect comorbid disease patterns, including novel ones, in patients with autism. BioMed Central 2020-10-17 /pmc/articles/PMC7568351/ /pubmed/33069223 http://dx.doi.org/10.1186/s12911-020-01282-z Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Li, Xiaojun
Liu, Guangjian
Chen, Wenxiong
Bi, Zhisheng
Liang, Huiying
Network analysis of autistic disease comorbidities in Chinese children based on ICD-10 codes
title Network analysis of autistic disease comorbidities in Chinese children based on ICD-10 codes
title_full Network analysis of autistic disease comorbidities in Chinese children based on ICD-10 codes
title_fullStr Network analysis of autistic disease comorbidities in Chinese children based on ICD-10 codes
title_full_unstemmed Network analysis of autistic disease comorbidities in Chinese children based on ICD-10 codes
title_short Network analysis of autistic disease comorbidities in Chinese children based on ICD-10 codes
title_sort network analysis of autistic disease comorbidities in chinese children based on icd-10 codes
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7568351/
https://www.ncbi.nlm.nih.gov/pubmed/33069223
http://dx.doi.org/10.1186/s12911-020-01282-z
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