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Signaling pathways have an inherent need for noise to acquire information

BACKGROUND: All living systems acquire information about their environment. At the cellular level, they do so through signaling pathways. Such pathways rely on reversible binding interactions between molecules that detect and transmit the presence of an extracellular cue or signal to the cell’s inte...

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Autores principales: Azpeitia, Eugenio, Balanzario, Eugenio P., Wagner, Andreas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7568421/
https://www.ncbi.nlm.nih.gov/pubmed/33066727
http://dx.doi.org/10.1186/s12859-020-03778-x
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author Azpeitia, Eugenio
Balanzario, Eugenio P.
Wagner, Andreas
author_facet Azpeitia, Eugenio
Balanzario, Eugenio P.
Wagner, Andreas
author_sort Azpeitia, Eugenio
collection PubMed
description BACKGROUND: All living systems acquire information about their environment. At the cellular level, they do so through signaling pathways. Such pathways rely on reversible binding interactions between molecules that detect and transmit the presence of an extracellular cue or signal to the cell’s interior. These interactions are inherently stochastic and thus noisy. On the one hand, noise can cause a signaling pathway to produce the same response for different stimuli, which reduces the amount of information a pathway acquires. On the other hand, in processes such as stochastic resonance, noise can improve the detection of weak stimuli and thus the acquisition of information. It is not clear whether the kinetic parameters that determine a pathway’s operation cause noise to reduce or increase the acquisition of information. RESULTS: We analyze how the kinetic properties of the reversible binding interactions used by signaling pathways affect the relationship between noise, the response to a signal, and information acquisition. Our results show that, under a wide range of biologically sensible parameter values, a noisy dynamic of reversible binding interactions is necessary to produce distinct responses to different stimuli. As a consequence, noise is indispensable for the acquisition of information in signaling pathways. CONCLUSIONS: Our observations go beyond previous work by showing that noise plays a positive role in signaling pathways, demonstrating that noise is essential when such pathways acquire information.
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spelling pubmed-75684212020-10-20 Signaling pathways have an inherent need for noise to acquire information Azpeitia, Eugenio Balanzario, Eugenio P. Wagner, Andreas BMC Bioinformatics Research Article BACKGROUND: All living systems acquire information about their environment. At the cellular level, they do so through signaling pathways. Such pathways rely on reversible binding interactions between molecules that detect and transmit the presence of an extracellular cue or signal to the cell’s interior. These interactions are inherently stochastic and thus noisy. On the one hand, noise can cause a signaling pathway to produce the same response for different stimuli, which reduces the amount of information a pathway acquires. On the other hand, in processes such as stochastic resonance, noise can improve the detection of weak stimuli and thus the acquisition of information. It is not clear whether the kinetic parameters that determine a pathway’s operation cause noise to reduce or increase the acquisition of information. RESULTS: We analyze how the kinetic properties of the reversible binding interactions used by signaling pathways affect the relationship between noise, the response to a signal, and information acquisition. Our results show that, under a wide range of biologically sensible parameter values, a noisy dynamic of reversible binding interactions is necessary to produce distinct responses to different stimuli. As a consequence, noise is indispensable for the acquisition of information in signaling pathways. CONCLUSIONS: Our observations go beyond previous work by showing that noise plays a positive role in signaling pathways, demonstrating that noise is essential when such pathways acquire information. BioMed Central 2020-10-16 /pmc/articles/PMC7568421/ /pubmed/33066727 http://dx.doi.org/10.1186/s12859-020-03778-x Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Azpeitia, Eugenio
Balanzario, Eugenio P.
Wagner, Andreas
Signaling pathways have an inherent need for noise to acquire information
title Signaling pathways have an inherent need for noise to acquire information
title_full Signaling pathways have an inherent need for noise to acquire information
title_fullStr Signaling pathways have an inherent need for noise to acquire information
title_full_unstemmed Signaling pathways have an inherent need for noise to acquire information
title_short Signaling pathways have an inherent need for noise to acquire information
title_sort signaling pathways have an inherent need for noise to acquire information
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7568421/
https://www.ncbi.nlm.nih.gov/pubmed/33066727
http://dx.doi.org/10.1186/s12859-020-03778-x
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