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The genetics-BIDS extension: Easing the search for genetic data associated with human brain imaging

Metadata are what makes databases searchable. Without them, researchers would have difficulty finding data with features they are interested in. Brain imaging genetics is at the intersection of two disciplines, each with dedicated dictionaries and ontologies facilitating data search and analysis. He...

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Autores principales: Moreau, Clara A, Jean-Louis, Martineau, Blair, Ross, Markiewicz, Christopher J, Turner, Jessica A, Calhoun, Vince D, Nichols, Thomas E, Pernet, Cyril R
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7568436/
https://www.ncbi.nlm.nih.gov/pubmed/33068112
http://dx.doi.org/10.1093/gigascience/giaa104
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author Moreau, Clara A
Jean-Louis, Martineau
Blair, Ross
Markiewicz, Christopher J
Turner, Jessica A
Calhoun, Vince D
Nichols, Thomas E
Pernet, Cyril R
author_facet Moreau, Clara A
Jean-Louis, Martineau
Blair, Ross
Markiewicz, Christopher J
Turner, Jessica A
Calhoun, Vince D
Nichols, Thomas E
Pernet, Cyril R
author_sort Moreau, Clara A
collection PubMed
description Metadata are what makes databases searchable. Without them, researchers would have difficulty finding data with features they are interested in. Brain imaging genetics is at the intersection of two disciplines, each with dedicated dictionaries and ontologies facilitating data search and analysis. Here, we present the genetics Brain Imaging Data Structure extension, consisting of metadata files for human brain imaging data to which they are linked, and describe succinctly the genomic and transcriptomic data associated with them, which may be in different databases. This extension will facilitate identifying micro-scale molecular features that are linked to macro-scale imaging repositories, facilitating data aggregation across studies.
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spelling pubmed-75684362020-10-21 The genetics-BIDS extension: Easing the search for genetic data associated with human brain imaging Moreau, Clara A Jean-Louis, Martineau Blair, Ross Markiewicz, Christopher J Turner, Jessica A Calhoun, Vince D Nichols, Thomas E Pernet, Cyril R Gigascience Commentary Metadata are what makes databases searchable. Without them, researchers would have difficulty finding data with features they are interested in. Brain imaging genetics is at the intersection of two disciplines, each with dedicated dictionaries and ontologies facilitating data search and analysis. Here, we present the genetics Brain Imaging Data Structure extension, consisting of metadata files for human brain imaging data to which they are linked, and describe succinctly the genomic and transcriptomic data associated with them, which may be in different databases. This extension will facilitate identifying micro-scale molecular features that are linked to macro-scale imaging repositories, facilitating data aggregation across studies. Oxford University Press 2020-10-17 /pmc/articles/PMC7568436/ /pubmed/33068112 http://dx.doi.org/10.1093/gigascience/giaa104 Text en © The Author(s) 2020. Published by Oxford University Press GigaScience. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Commentary
Moreau, Clara A
Jean-Louis, Martineau
Blair, Ross
Markiewicz, Christopher J
Turner, Jessica A
Calhoun, Vince D
Nichols, Thomas E
Pernet, Cyril R
The genetics-BIDS extension: Easing the search for genetic data associated with human brain imaging
title The genetics-BIDS extension: Easing the search for genetic data associated with human brain imaging
title_full The genetics-BIDS extension: Easing the search for genetic data associated with human brain imaging
title_fullStr The genetics-BIDS extension: Easing the search for genetic data associated with human brain imaging
title_full_unstemmed The genetics-BIDS extension: Easing the search for genetic data associated with human brain imaging
title_short The genetics-BIDS extension: Easing the search for genetic data associated with human brain imaging
title_sort genetics-bids extension: easing the search for genetic data associated with human brain imaging
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7568436/
https://www.ncbi.nlm.nih.gov/pubmed/33068112
http://dx.doi.org/10.1093/gigascience/giaa104
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