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Whole genome sequence of Serratia marcescens 39_H1, a potential hydrolytic and acidogenic strain
Here, we report a high quality annotated draft genome of Serratia marcescens 39_H1, a Gram-negative facultative anaerobe that was isolated from an anaerobic digester. The strain exhibited hydrolytic/acidogenic properties by significantly improving methane production when used as a single isolate ino...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7569290/ https://www.ncbi.nlm.nih.gov/pubmed/33102161 http://dx.doi.org/10.1016/j.btre.2020.e00542 |
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author | Obi, Linda U. Tekere, Memory Roopnarain, Ashira Sanko, Tomasz Maguvu, Tawanda E. Bezuidenhout, Cornelius C. Adeleke, Rasheed A. |
author_facet | Obi, Linda U. Tekere, Memory Roopnarain, Ashira Sanko, Tomasz Maguvu, Tawanda E. Bezuidenhout, Cornelius C. Adeleke, Rasheed A. |
author_sort | Obi, Linda U. |
collection | PubMed |
description | Here, we report a high quality annotated draft genome of Serratia marcescens 39_H1, a Gram-negative facultative anaerobe that was isolated from an anaerobic digester. The strain exhibited hydrolytic/acidogenic properties by significantly improving methane production when used as a single isolate inoculum during anaerobic digestion of water hyacinth and cow dung. The total genome size of the isolate was 5,106,712 bp which corresponds to an N50 of 267,528 and G + C content of 59.7 %. Genome annotation with the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) predicted a total of 4,908 genes of which 4,755 were protein coding genes; there were no plasmids detected. A number of genes associated with hydrolytic/acidogenic activities as well as other metabolic activities were identified and discussed. |
format | Online Article Text |
id | pubmed-7569290 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-75692902020-10-22 Whole genome sequence of Serratia marcescens 39_H1, a potential hydrolytic and acidogenic strain Obi, Linda U. Tekere, Memory Roopnarain, Ashira Sanko, Tomasz Maguvu, Tawanda E. Bezuidenhout, Cornelius C. Adeleke, Rasheed A. Biotechnol Rep (Amst) Research Article Here, we report a high quality annotated draft genome of Serratia marcescens 39_H1, a Gram-negative facultative anaerobe that was isolated from an anaerobic digester. The strain exhibited hydrolytic/acidogenic properties by significantly improving methane production when used as a single isolate inoculum during anaerobic digestion of water hyacinth and cow dung. The total genome size of the isolate was 5,106,712 bp which corresponds to an N50 of 267,528 and G + C content of 59.7 %. Genome annotation with the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) predicted a total of 4,908 genes of which 4,755 were protein coding genes; there were no plasmids detected. A number of genes associated with hydrolytic/acidogenic activities as well as other metabolic activities were identified and discussed. Elsevier 2020-10-09 /pmc/articles/PMC7569290/ /pubmed/33102161 http://dx.doi.org/10.1016/j.btre.2020.e00542 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Obi, Linda U. Tekere, Memory Roopnarain, Ashira Sanko, Tomasz Maguvu, Tawanda E. Bezuidenhout, Cornelius C. Adeleke, Rasheed A. Whole genome sequence of Serratia marcescens 39_H1, a potential hydrolytic and acidogenic strain |
title | Whole genome sequence of Serratia marcescens 39_H1, a potential hydrolytic and acidogenic strain |
title_full | Whole genome sequence of Serratia marcescens 39_H1, a potential hydrolytic and acidogenic strain |
title_fullStr | Whole genome sequence of Serratia marcescens 39_H1, a potential hydrolytic and acidogenic strain |
title_full_unstemmed | Whole genome sequence of Serratia marcescens 39_H1, a potential hydrolytic and acidogenic strain |
title_short | Whole genome sequence of Serratia marcescens 39_H1, a potential hydrolytic and acidogenic strain |
title_sort | whole genome sequence of serratia marcescens 39_h1, a potential hydrolytic and acidogenic strain |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7569290/ https://www.ncbi.nlm.nih.gov/pubmed/33102161 http://dx.doi.org/10.1016/j.btre.2020.e00542 |
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