Cargando…

CGNet: A graph-knowledge embedded convolutional neural network for detection of pneumonia

Pneumonia is a global disease that causes high children mortality. The situation has even been worsening by the outbreak of the new coronavirus named COVID-19, which has killed more than 983,907 so far. People infected by the virus would show symptoms like fever and coughing as well as pneumonia as...

Descripción completa

Detalles Bibliográficos
Autores principales: Yu, Xiang, Wang, Shui-Hua, Zhang, Yu-Dong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7569413/
https://www.ncbi.nlm.nih.gov/pubmed/33100482
http://dx.doi.org/10.1016/j.ipm.2020.102411
_version_ 1783596725809709056
author Yu, Xiang
Wang, Shui-Hua
Zhang, Yu-Dong
author_facet Yu, Xiang
Wang, Shui-Hua
Zhang, Yu-Dong
author_sort Yu, Xiang
collection PubMed
description Pneumonia is a global disease that causes high children mortality. The situation has even been worsening by the outbreak of the new coronavirus named COVID-19, which has killed more than 983,907 so far. People infected by the virus would show symptoms like fever and coughing as well as pneumonia as the infection progresses. Timely detection is a public consensus achieved that would benefit possible treatments and therefore contain the spread of COVID-19. X-ray, an expedient imaging technique, has been widely used for the detection of pneumonia caused by COVID-19 and some other virus. To facilitate the process of diagnosis of pneumonia, we developed a deep learning framework for a binary classification task that classifies chest X-ray images into normal and pneumonia based on our proposed CGNet. In our CGNet, there are three components including feature extraction, graph-based feature reconstruction and classification. We first use the transfer learning technique to train the state-of-the-art convolutional neural networks (CNNs) for binary classification while the trained CNNs are used to produce features for the following two components. Then, by deploying graph-based feature reconstruction, we, therefore, combine features through the graph to reconstruct features. Finally, a shallow neural network named GNet, a one layer graph neural network, which takes the combined features as the input, classifies chest X-ray images into normal and pneumonia. Our model achieved the best accuracy at 0.9872, sensitivity at 1 and specificity at 0.9795 on a public pneumonia dataset that includes 5,856 chest X-ray images. To evaluate the performance of our proposed method on detection of pneumonia caused by COVID-19, we also tested the proposed method on a public COVID-19 CT dataset, where we achieved the highest performance at the accuracy of 0.99, specificity at 1 and sensitivity at 0.98, respectively.
format Online
Article
Text
id pubmed-7569413
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier Ltd.
record_format MEDLINE/PubMed
spelling pubmed-75694132020-10-19 CGNet: A graph-knowledge embedded convolutional neural network for detection of pneumonia Yu, Xiang Wang, Shui-Hua Zhang, Yu-Dong Inf Process Manag Article Pneumonia is a global disease that causes high children mortality. The situation has even been worsening by the outbreak of the new coronavirus named COVID-19, which has killed more than 983,907 so far. People infected by the virus would show symptoms like fever and coughing as well as pneumonia as the infection progresses. Timely detection is a public consensus achieved that would benefit possible treatments and therefore contain the spread of COVID-19. X-ray, an expedient imaging technique, has been widely used for the detection of pneumonia caused by COVID-19 and some other virus. To facilitate the process of diagnosis of pneumonia, we developed a deep learning framework for a binary classification task that classifies chest X-ray images into normal and pneumonia based on our proposed CGNet. In our CGNet, there are three components including feature extraction, graph-based feature reconstruction and classification. We first use the transfer learning technique to train the state-of-the-art convolutional neural networks (CNNs) for binary classification while the trained CNNs are used to produce features for the following two components. Then, by deploying graph-based feature reconstruction, we, therefore, combine features through the graph to reconstruct features. Finally, a shallow neural network named GNet, a one layer graph neural network, which takes the combined features as the input, classifies chest X-ray images into normal and pneumonia. Our model achieved the best accuracy at 0.9872, sensitivity at 1 and specificity at 0.9795 on a public pneumonia dataset that includes 5,856 chest X-ray images. To evaluate the performance of our proposed method on detection of pneumonia caused by COVID-19, we also tested the proposed method on a public COVID-19 CT dataset, where we achieved the highest performance at the accuracy of 0.99, specificity at 1 and sensitivity at 0.98, respectively. Elsevier Ltd. 2021-01 2020-10-19 /pmc/articles/PMC7569413/ /pubmed/33100482 http://dx.doi.org/10.1016/j.ipm.2020.102411 Text en © 2020 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Yu, Xiang
Wang, Shui-Hua
Zhang, Yu-Dong
CGNet: A graph-knowledge embedded convolutional neural network for detection of pneumonia
title CGNet: A graph-knowledge embedded convolutional neural network for detection of pneumonia
title_full CGNet: A graph-knowledge embedded convolutional neural network for detection of pneumonia
title_fullStr CGNet: A graph-knowledge embedded convolutional neural network for detection of pneumonia
title_full_unstemmed CGNet: A graph-knowledge embedded convolutional neural network for detection of pneumonia
title_short CGNet: A graph-knowledge embedded convolutional neural network for detection of pneumonia
title_sort cgnet: a graph-knowledge embedded convolutional neural network for detection of pneumonia
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7569413/
https://www.ncbi.nlm.nih.gov/pubmed/33100482
http://dx.doi.org/10.1016/j.ipm.2020.102411
work_keys_str_mv AT yuxiang cgnetagraphknowledgeembeddedconvolutionalneuralnetworkfordetectionofpneumonia
AT wangshuihua cgnetagraphknowledgeembeddedconvolutionalneuralnetworkfordetectionofpneumonia
AT zhangyudong cgnetagraphknowledgeembeddedconvolutionalneuralnetworkfordetectionofpneumonia