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Conceptual DFT-Based Computational Peptidology of Marine Natural Compounds: Discodermins A–H
A methodology based on the concepts that arise from Density Functional Theory named Conceptual Density Functional Theory (CDFT) was chosen for the calculation of some global and local reactivity descriptors of the Discodermins A–H family of marine peptides through the consideration of the KID (Koopm...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7570683/ https://www.ncbi.nlm.nih.gov/pubmed/32932850 http://dx.doi.org/10.3390/molecules25184158 |
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author | Flores-Holguín, Norma Frau, Juan Glossman-Mitnik, Daniel |
author_facet | Flores-Holguín, Norma Frau, Juan Glossman-Mitnik, Daniel |
author_sort | Flores-Holguín, Norma |
collection | PubMed |
description | A methodology based on the concepts that arise from Density Functional Theory named Conceptual Density Functional Theory (CDFT) was chosen for the calculation of some global and local reactivity descriptors of the Discodermins A–H family of marine peptides through the consideration of the KID (Koopmans in DFT) technique that was successfully used in previous studies of this kind of molecular systems. The determination of active sites of the studied molecules for different kinds of reactivities was achieved by resorting to some CDFT-based descriptors like the Fukui functions as well as the Parr functions derived from Molecular Electron Density Theory (MEDT). A few properties identified with their ability to behave as a drug and the bioactivity of the peptides considered in this examination were acquired by depending on a homology model by studying the correlation with the known bioactivity of related molecules in their interaction with various biological receptors. With the further object of analyzing their bioactivity, some parameters of usefulness for future QSAR studies, their predicted biological targets, and the ADME (Absorption, Distribution, Metabolism, and Excretion) parameters related to the Discodermins A–H pharmacokinetics are also reported. |
format | Online Article Text |
id | pubmed-7570683 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-75706832020-10-28 Conceptual DFT-Based Computational Peptidology of Marine Natural Compounds: Discodermins A–H Flores-Holguín, Norma Frau, Juan Glossman-Mitnik, Daniel Molecules Article A methodology based on the concepts that arise from Density Functional Theory named Conceptual Density Functional Theory (CDFT) was chosen for the calculation of some global and local reactivity descriptors of the Discodermins A–H family of marine peptides through the consideration of the KID (Koopmans in DFT) technique that was successfully used in previous studies of this kind of molecular systems. The determination of active sites of the studied molecules for different kinds of reactivities was achieved by resorting to some CDFT-based descriptors like the Fukui functions as well as the Parr functions derived from Molecular Electron Density Theory (MEDT). A few properties identified with their ability to behave as a drug and the bioactivity of the peptides considered in this examination were acquired by depending on a homology model by studying the correlation with the known bioactivity of related molecules in their interaction with various biological receptors. With the further object of analyzing their bioactivity, some parameters of usefulness for future QSAR studies, their predicted biological targets, and the ADME (Absorption, Distribution, Metabolism, and Excretion) parameters related to the Discodermins A–H pharmacokinetics are also reported. MDPI 2020-09-11 /pmc/articles/PMC7570683/ /pubmed/32932850 http://dx.doi.org/10.3390/molecules25184158 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Flores-Holguín, Norma Frau, Juan Glossman-Mitnik, Daniel Conceptual DFT-Based Computational Peptidology of Marine Natural Compounds: Discodermins A–H |
title | Conceptual DFT-Based Computational Peptidology of Marine Natural Compounds: Discodermins A–H |
title_full | Conceptual DFT-Based Computational Peptidology of Marine Natural Compounds: Discodermins A–H |
title_fullStr | Conceptual DFT-Based Computational Peptidology of Marine Natural Compounds: Discodermins A–H |
title_full_unstemmed | Conceptual DFT-Based Computational Peptidology of Marine Natural Compounds: Discodermins A–H |
title_short | Conceptual DFT-Based Computational Peptidology of Marine Natural Compounds: Discodermins A–H |
title_sort | conceptual dft-based computational peptidology of marine natural compounds: discodermins a–h |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7570683/ https://www.ncbi.nlm.nih.gov/pubmed/32932850 http://dx.doi.org/10.3390/molecules25184158 |
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