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Genetic and phylogenetic analysis of canine bufavirus from Anhui Province, Eastern China
Bufavirus is a novel virus associated with canine gastroenteritis. Three strains of bufavirus were first detected in dog feces collected from Anhui province in Eastern China. The near-complete genome sequences were amplified. Sequence alignment showed 98.3–99.5% homology between the three bufavirus...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier B.V.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7573632/ https://www.ncbi.nlm.nih.gov/pubmed/33091576 http://dx.doi.org/10.1016/j.meegid.2020.104600 |
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author | Wang, Yong Guo, Xu Zhang, Da Sun, Jianfei Li, Wei Fu, Ziteng Liu, Guangqing Li, Yongdong Jiang, Shudong |
author_facet | Wang, Yong Guo, Xu Zhang, Da Sun, Jianfei Li, Wei Fu, Ziteng Liu, Guangqing Li, Yongdong Jiang, Shudong |
author_sort | Wang, Yong |
collection | PubMed |
description | Bufavirus is a novel virus associated with canine gastroenteritis. Three strains of bufavirus were first detected in dog feces collected from Anhui province in Eastern China. The near-complete genome sequences were amplified. Sequence alignment showed 98.3–99.5% homology between the three bufavirus strains and reference strains. Phylogenetic analysis showed the distributed viruses forming a cluster of close relationships. Selective pressure analysis of the VP2 region indicated that the canine bufavirus (CBuV) was mainly subject to negative selection during evolution. The negative selection site was located on the residue of B-cell epitopes, indicating minimal change to the virus's immunogenicity. Since this is the first report of CBuV circulating in Anhui Province, this study will provide further understanding of the phylogenetic and molecular characteristics of CBuV and serve as a reference for prevention and vaccine development. |
format | Online Article Text |
id | pubmed-7573632 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier B.V. |
record_format | MEDLINE/PubMed |
spelling | pubmed-75736322020-10-20 Genetic and phylogenetic analysis of canine bufavirus from Anhui Province, Eastern China Wang, Yong Guo, Xu Zhang, Da Sun, Jianfei Li, Wei Fu, Ziteng Liu, Guangqing Li, Yongdong Jiang, Shudong Infect Genet Evol Research Paper Bufavirus is a novel virus associated with canine gastroenteritis. Three strains of bufavirus were first detected in dog feces collected from Anhui province in Eastern China. The near-complete genome sequences were amplified. Sequence alignment showed 98.3–99.5% homology between the three bufavirus strains and reference strains. Phylogenetic analysis showed the distributed viruses forming a cluster of close relationships. Selective pressure analysis of the VP2 region indicated that the canine bufavirus (CBuV) was mainly subject to negative selection during evolution. The negative selection site was located on the residue of B-cell epitopes, indicating minimal change to the virus's immunogenicity. Since this is the first report of CBuV circulating in Anhui Province, this study will provide further understanding of the phylogenetic and molecular characteristics of CBuV and serve as a reference for prevention and vaccine development. Elsevier B.V. 2020-12 2020-10-20 /pmc/articles/PMC7573632/ /pubmed/33091576 http://dx.doi.org/10.1016/j.meegid.2020.104600 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Research Paper Wang, Yong Guo, Xu Zhang, Da Sun, Jianfei Li, Wei Fu, Ziteng Liu, Guangqing Li, Yongdong Jiang, Shudong Genetic and phylogenetic analysis of canine bufavirus from Anhui Province, Eastern China |
title | Genetic and phylogenetic analysis of canine bufavirus from Anhui Province, Eastern China |
title_full | Genetic and phylogenetic analysis of canine bufavirus from Anhui Province, Eastern China |
title_fullStr | Genetic and phylogenetic analysis of canine bufavirus from Anhui Province, Eastern China |
title_full_unstemmed | Genetic and phylogenetic analysis of canine bufavirus from Anhui Province, Eastern China |
title_short | Genetic and phylogenetic analysis of canine bufavirus from Anhui Province, Eastern China |
title_sort | genetic and phylogenetic analysis of canine bufavirus from anhui province, eastern china |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7573632/ https://www.ncbi.nlm.nih.gov/pubmed/33091576 http://dx.doi.org/10.1016/j.meegid.2020.104600 |
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