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Inferring an animal’s environment through biologging: quantifying the environmental influence on animal movement

BACKGROUND: Animals respond to environmental variation by changing their movement in a multifaceted way. Recent advancements in biologging increasingly allow for detailed measurements of the multifaceted nature of movement, from descriptors of animal movement trajectories (e.g., using GPS) to descri...

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Autores principales: Eikelboom, J. A. J., de Knegt, H. J., Klaver, M., van Langevelde, F., van der Wal, T., Prins, H. H. T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7574229/
https://www.ncbi.nlm.nih.gov/pubmed/33088572
http://dx.doi.org/10.1186/s40462-020-00228-4
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author Eikelboom, J. A. J.
de Knegt, H. J.
Klaver, M.
van Langevelde, F.
van der Wal, T.
Prins, H. H. T.
author_facet Eikelboom, J. A. J.
de Knegt, H. J.
Klaver, M.
van Langevelde, F.
van der Wal, T.
Prins, H. H. T.
author_sort Eikelboom, J. A. J.
collection PubMed
description BACKGROUND: Animals respond to environmental variation by changing their movement in a multifaceted way. Recent advancements in biologging increasingly allow for detailed measurements of the multifaceted nature of movement, from descriptors of animal movement trajectories (e.g., using GPS) to descriptors of body part movements (e.g., using tri-axial accelerometers). Because this multivariate richness of movement data complicates inference on the environmental influence on animal movement, studies generally use simplified movement descriptors in statistical analyses. However, doing so limits the inference on the environmental influence on movement, as this requires that the multivariate richness of movement data can be fully considered in an analysis. METHODS: We propose a data-driven analytic framework, based on existing methods, to quantify the environmental influence on animal movement that can accommodate the multifaceted nature of animal movement. Instead of fitting a simplified movement descriptor to a suite of environmental variables, our proposed framework centres on predicting an environmental variable from the full set of multivariate movement data. The measure of fit of this prediction is taken to be the metric that quantifies how much of the environmental variation relates to the multivariate variation in animal movement. We demonstrate the usefulness of this framework through a case study about the influence of grass availability and time since milking on cow movements using machine learning algorithms. RESULTS: We show that on a one-hour timescale 37% of the variation in grass availability and 33% of time since milking influenced cow movements. Grass availability mostly influenced the cows’ neck movement during grazing, while time since milking mostly influenced the movement through the landscape and the shared variation of accelerometer and GPS data (e.g., activity patterns). Furthermore, this framework proved to be insensitive to spurious correlations between environmental variables in quantifying the influence on animal movement. CONCLUSIONS: Not only is our proposed framework well-suited to study the environmental influence on animal movement; we argue that it can also be applied in any field that uses multivariate biologging data, e.g., animal physiology, to study the relationships between animals and their environment. SUPPLEMENTARY INFORMATION: Supplementary information accompanies this paper at 10.1186/s40462-020-00228-4.
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spelling pubmed-75742292020-10-20 Inferring an animal’s environment through biologging: quantifying the environmental influence on animal movement Eikelboom, J. A. J. de Knegt, H. J. Klaver, M. van Langevelde, F. van der Wal, T. Prins, H. H. T. Mov Ecol Methodology Article BACKGROUND: Animals respond to environmental variation by changing their movement in a multifaceted way. Recent advancements in biologging increasingly allow for detailed measurements of the multifaceted nature of movement, from descriptors of animal movement trajectories (e.g., using GPS) to descriptors of body part movements (e.g., using tri-axial accelerometers). Because this multivariate richness of movement data complicates inference on the environmental influence on animal movement, studies generally use simplified movement descriptors in statistical analyses. However, doing so limits the inference on the environmental influence on movement, as this requires that the multivariate richness of movement data can be fully considered in an analysis. METHODS: We propose a data-driven analytic framework, based on existing methods, to quantify the environmental influence on animal movement that can accommodate the multifaceted nature of animal movement. Instead of fitting a simplified movement descriptor to a suite of environmental variables, our proposed framework centres on predicting an environmental variable from the full set of multivariate movement data. The measure of fit of this prediction is taken to be the metric that quantifies how much of the environmental variation relates to the multivariate variation in animal movement. We demonstrate the usefulness of this framework through a case study about the influence of grass availability and time since milking on cow movements using machine learning algorithms. RESULTS: We show that on a one-hour timescale 37% of the variation in grass availability and 33% of time since milking influenced cow movements. Grass availability mostly influenced the cows’ neck movement during grazing, while time since milking mostly influenced the movement through the landscape and the shared variation of accelerometer and GPS data (e.g., activity patterns). Furthermore, this framework proved to be insensitive to spurious correlations between environmental variables in quantifying the influence on animal movement. CONCLUSIONS: Not only is our proposed framework well-suited to study the environmental influence on animal movement; we argue that it can also be applied in any field that uses multivariate biologging data, e.g., animal physiology, to study the relationships between animals and their environment. SUPPLEMENTARY INFORMATION: Supplementary information accompanies this paper at 10.1186/s40462-020-00228-4. BioMed Central 2020-10-19 /pmc/articles/PMC7574229/ /pubmed/33088572 http://dx.doi.org/10.1186/s40462-020-00228-4 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Methodology Article
Eikelboom, J. A. J.
de Knegt, H. J.
Klaver, M.
van Langevelde, F.
van der Wal, T.
Prins, H. H. T.
Inferring an animal’s environment through biologging: quantifying the environmental influence on animal movement
title Inferring an animal’s environment through biologging: quantifying the environmental influence on animal movement
title_full Inferring an animal’s environment through biologging: quantifying the environmental influence on animal movement
title_fullStr Inferring an animal’s environment through biologging: quantifying the environmental influence on animal movement
title_full_unstemmed Inferring an animal’s environment through biologging: quantifying the environmental influence on animal movement
title_short Inferring an animal’s environment through biologging: quantifying the environmental influence on animal movement
title_sort inferring an animal’s environment through biologging: quantifying the environmental influence on animal movement
topic Methodology Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7574229/
https://www.ncbi.nlm.nih.gov/pubmed/33088572
http://dx.doi.org/10.1186/s40462-020-00228-4
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