Cargando…

Automated inference of Boolean models from molecular interaction maps using CaSQ

MOTIVATION: Molecular interaction maps have emerged as a meaningful way of representing biological mechanisms in a comprehensive and systematic manner. However, their static nature provides limited insights to the emerging behaviour of the described biological system under different conditions. Comp...

Descripción completa

Detalles Bibliográficos
Autores principales:	Aghamiri, Sara Sadat, Singh, Vidisha, Naldi, Aurélien, Helikar, Tomáš, Soliman, Sylvain, Niarakis, Anna
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2020
Materias:	Original Papers
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7575051/ https://www.ncbi.nlm.nih.gov/pubmed/32403123 http://dx.doi.org/10.1093/bioinformatics/btaa484

Ejemplares similares

A large-scale Boolean model of the rheumatoid arthritis fibroblast-like synoviocytes predicts drug synergies in the arthritic joint
por: Singh, Vidisha, et al.
Publicado: (2023)

Recent applications of quantitative systems pharmacology and machine learning models across diseases
por: Aghamiri, Sara Sadat, et al.
Publicado: (2021)

Computational Systems Biology Approach for the Study of Rheumatoid Arthritis: From a Molecular Map to a Dynamical Model
por: Singh, Vidisha, et al.
Publicado: (2017)

A multiscale mechanistic model of human dendritic cells for in-silico investigation of immune responses and novel therapeutics discovery
por: Aghamiri, Sara Sadat, et al.
Publicado: (2023)

An Association Study of CASQ1 Gene Polymorphisms and Heat Stroke
por: Li, Ying, et al.
Publicado: (2014)

Inference of an Integrative, Executable Network for Rheumatoid Arthritis Combining Data-Driven Machine Learning Approaches and a State-of-the-Art Mechanistic Disease Map
por: Miagoux, Quentin, et al.
Publicado: (2021)

Dynamical Boolean Modeling of Immunogenic Cell Death
por: Checcoli, Andrea, et al.
Publicado: (2020)

Boolean modelling as a logic-based dynamic approach in systems medicine
por: Hemedan, Ahmed Abdelmonem, et al.
Publicado: (2022)

CASQ2 variants in Chinese children with catecholaminergic polymorphic ventricular tachycardia
por: Li, Qirui, et al.
Publicado: (2019)

Boolean Models of Genomic Regulatory Networks: Reduction Mappings, Inference, and External Control
por: Ivanov, Ivan
Publicado: (2009)

CASQ1‐related myopathy: The first report from China and the literature review
por: Zhang, Kai‐Yue, et al.
Publicado: (2022)

Inference of Boolean Networks Using Sensitivity Regularization
por: Liu, Wenbin, et al.
Publicado: (2008)

Sensitivity analysis of biological Boolean networks using information fusion based on nonadditive set functions
por: Kochi, Naomi, et al.
Publicado: (2014)

Inferring Boolean network states from partial information
por: Karlebach, Guy
Publicado: (2013)

Cloning, Expression, and Characterization of the Squid Na(+)–Ca(2+) Exchanger (NCX-SQ1)
por: He, Zhaoping, et al.
Publicado: (1998)

Cancer Appetite and Symptom Questionnaire (CASQ) for Brazilian Patients: Cross-Cultural Adaptation and Validation Study
por: Spexoto, Maria Claudia Bernardes, et al.
Publicado: (2016)

Compound heterozygous CASQ2 mutations and long‐term course of catecholaminergic polymorphic ventricular tachycardia
por: Josephs, Katherine, et al.
Publicado: (2017)

A Homozygous CASQ2 Mutation in a Japanese Patient with Catecholaminergic Polymorphic Ventricular Tachycardia
por: Fujisawa, Taishi, et al.
Publicado: (2019)

Triadin/Junctin Double Null Mouse Reveals a Differential Role for Triadin and Junctin in Anchoring CASQ to the jSR and Regulating Ca(2+) Homeostasis
por: Boncompagni, Simona, et al.
Publicado: (2012)

A Full Bayesian Approach for Boolean Genetic Network Inference
por: Han, Shengtong, et al.
Publicado: (2014)

Inference of a Boolean Network From Causal Logic Implications
por: Maheshwari, Parul, et al.
Publicado: (2022)

Review and assessment of Boolean approaches for inference of gene regulatory networks
por: Pušnik, Žiga, et al.
Publicado: (2022)

Electronic switching circuits: Boolean algebra and mapping
por: Mandl, Matthew
Publicado: (1969)

Identification of putative master regulators in rheumatoid arthritis synovial fibroblasts using gene expression data and network inference
por: Zerrouk, Naouel, et al.
Publicado: (2020)

An Evaluation of Methods for Inferring Boolean Networks from Time-Series Data
por: Berestovsky, Natalie, et al.
Publicado: (2013)

Griffin: A Tool for Symbolic Inference of Synchronous Boolean Molecular Networks
por: Muñoz, Stalin, et al.
Publicado: (2018)

Boolean network sketches: a unifying framework for logical model inference
por: Beneš, Nikola, et al.
Publicado: (2023)

Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach
por: Aghakhani, Sahar, et al.
Publicado: (2022)

The combination of the functionalities of feedback circuits is determinant for the attractors’ number and size in pathway-like Boolean networks
por: Azpeitia, Eugenio, et al.
Publicado: (2017)

Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology
por: Niarakis, Anna, et al.
Publicado: (2022)

In Vivo Efficacy of SQ109 against Leishmania donovani, Trypanosoma spp. and Toxoplasma gondii and In Vitro Activity of SQ109 Metabolites
por: Baek, Kyung-Hwa, et al.
Publicado: (2022)

Erratum: The combination of the functionalities of feedback circuits is determinant for the attractors’ number and size in pathway-like Boolean networks
por: Azpeitia, Eugenio, et al.
Publicado: (2017)

Analysis and Practical Guideline of Constraint-Based Boolean Method in Genetic Network Inference
por: Saithong, Treenut, et al.
Publicado: (2012)

A novel Boolean network inference strategy to model early hematopoiesis aging
por: Hérault, Léonard, et al.
Publicado: (2022)

Boolean reasoning : the logic of Boolean equations
por: Brown, Frank Markham, 1930-
Publicado: (1990)

Efficient Boolean implementation of universal sequence maps (bUSM)
por: Schwacke, John, et al.
Publicado: (2002)

Inference of a Probabilistic Boolean Network from a Single Observed Temporal Sequence
por: Marshall, Stephen, et al.
Publicado: (2007)

Inference of Biological Pathway from Gene Expression Profiles by Time Delay Boolean Networks
por: Chueh, Tung-Hung, et al.
Publicado: (2012)

Boolean network inference from time series data incorporating prior biological knowledge
por: Haider, Saad, et al.
Publicado: (2012)

An information theoretic approach for the inference of Boolean networks and functions from data: BoCSE
por: Murrugarra, David, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_lh0srie5mkdtqv81mpf1nbpr0r