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Maximising the clustering coefficient of networks and the effects on habitat network robustness
The robustness of networks against node failure and the response of networks to node removal has been studied extensively for networks such as transportation networks, power grids, and food webs. In many cases, a network’s clustering coefficient was identified as a good indicator for network robustn...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7575089/ https://www.ncbi.nlm.nih.gov/pubmed/33079943 http://dx.doi.org/10.1371/journal.pone.0240940 |
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author | Heer, Henriette Streib, Lucas Schäfer, Ralf B. Ruzika, Stefan |
author_facet | Heer, Henriette Streib, Lucas Schäfer, Ralf B. Ruzika, Stefan |
author_sort | Heer, Henriette |
collection | PubMed |
description | The robustness of networks against node failure and the response of networks to node removal has been studied extensively for networks such as transportation networks, power grids, and food webs. In many cases, a network’s clustering coefficient was identified as a good indicator for network robustness. In ecology, habitat networks constitute a powerful tool to represent metapopulations or -communities, where nodes represent habitat patches and links indicate how these are connected. Current climate and land-use changes result in decline of habitat area and its connectivity and are thus the main drivers for the ongoing biodiversity loss. Conservation efforts are therefore needed to improve the connectivity and mitigate effects of habitat loss. Habitat loss can easily be modelled with the help of habitat networks and the question arises how to modify networks to obtain higher robustness. Here, we develop tools to identify which links should be added to a network to increase the robustness. We introduce two different heuristics, Greedy and Lazy Greedy, to maximize the clustering coefficient if multiple links can be added. We test these approaches and compare the results to the optimal solution for different generic networks including a variety of standard networks as well as spatially explicit landscape based habitat networks. In a last step, we simulate the robustness of habitat networks before and after adding multiple links and investigate the increase in robustness depending on both the number of added links and the heuristic used. We found that using our heuristics to add links to sparse networks such as habitat networks has a greater impact on the clustering coefficient compared to randomly adding links. The Greedy algorithm delivered optimal results in almost all cases when adding two links to the network. Furthermore, the robustness of networks increased with the number of additional links added using the Greedy or Lazy Greedy algorithm. |
format | Online Article Text |
id | pubmed-7575089 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-75750892020-10-26 Maximising the clustering coefficient of networks and the effects on habitat network robustness Heer, Henriette Streib, Lucas Schäfer, Ralf B. Ruzika, Stefan PLoS One Research Article The robustness of networks against node failure and the response of networks to node removal has been studied extensively for networks such as transportation networks, power grids, and food webs. In many cases, a network’s clustering coefficient was identified as a good indicator for network robustness. In ecology, habitat networks constitute a powerful tool to represent metapopulations or -communities, where nodes represent habitat patches and links indicate how these are connected. Current climate and land-use changes result in decline of habitat area and its connectivity and are thus the main drivers for the ongoing biodiversity loss. Conservation efforts are therefore needed to improve the connectivity and mitigate effects of habitat loss. Habitat loss can easily be modelled with the help of habitat networks and the question arises how to modify networks to obtain higher robustness. Here, we develop tools to identify which links should be added to a network to increase the robustness. We introduce two different heuristics, Greedy and Lazy Greedy, to maximize the clustering coefficient if multiple links can be added. We test these approaches and compare the results to the optimal solution for different generic networks including a variety of standard networks as well as spatially explicit landscape based habitat networks. In a last step, we simulate the robustness of habitat networks before and after adding multiple links and investigate the increase in robustness depending on both the number of added links and the heuristic used. We found that using our heuristics to add links to sparse networks such as habitat networks has a greater impact on the clustering coefficient compared to randomly adding links. The Greedy algorithm delivered optimal results in almost all cases when adding two links to the network. Furthermore, the robustness of networks increased with the number of additional links added using the Greedy or Lazy Greedy algorithm. Public Library of Science 2020-10-20 /pmc/articles/PMC7575089/ /pubmed/33079943 http://dx.doi.org/10.1371/journal.pone.0240940 Text en © 2020 Heer et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Heer, Henriette Streib, Lucas Schäfer, Ralf B. Ruzika, Stefan Maximising the clustering coefficient of networks and the effects on habitat network robustness |
title | Maximising the clustering coefficient of networks and the effects on habitat network robustness |
title_full | Maximising the clustering coefficient of networks and the effects on habitat network robustness |
title_fullStr | Maximising the clustering coefficient of networks and the effects on habitat network robustness |
title_full_unstemmed | Maximising the clustering coefficient of networks and the effects on habitat network robustness |
title_short | Maximising the clustering coefficient of networks and the effects on habitat network robustness |
title_sort | maximising the clustering coefficient of networks and the effects on habitat network robustness |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7575089/ https://www.ncbi.nlm.nih.gov/pubmed/33079943 http://dx.doi.org/10.1371/journal.pone.0240940 |
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