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On the use of growth models to understand epidemic outbreaks with application to COVID-19 data

The initial phase dynamics of an epidemic without containment measures is commonly well modelled using exponential growth models. However, in the presence of containment measures, the exponential model becomes less appropriate. Under the implementation of an isolation measure for detected infectives...

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Autores principales: Tovissodé, Chénangnon Frédéric, Lokonon, Bruno Enagnon, Glèlè Kakaï, Romain
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7575103/
https://www.ncbi.nlm.nih.gov/pubmed/33079964
http://dx.doi.org/10.1371/journal.pone.0240578
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author Tovissodé, Chénangnon Frédéric
Lokonon, Bruno Enagnon
Glèlè Kakaï, Romain
author_facet Tovissodé, Chénangnon Frédéric
Lokonon, Bruno Enagnon
Glèlè Kakaï, Romain
author_sort Tovissodé, Chénangnon Frédéric
collection PubMed
description The initial phase dynamics of an epidemic without containment measures is commonly well modelled using exponential growth models. However, in the presence of containment measures, the exponential model becomes less appropriate. Under the implementation of an isolation measure for detected infectives, we propose to model epidemic dynamics by fitting a flexible growth model curve to reported positive cases, and to infer the overall epidemic dynamics by introducing information on the detection/testing effort and recovery and death rates. The resulting modelling approach is close to the Susceptible-Infectious-Quarantined-Recovered model framework. We focused on predicting the peaks (time and size) in positive cases, active cases and new infections. We applied the approach to data from the COVID-19 outbreak in Italy. Fits on limited data before the observed peaks illustrate the ability of the flexible growth model to approach the estimates from the whole data.
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spelling pubmed-75751032020-10-26 On the use of growth models to understand epidemic outbreaks with application to COVID-19 data Tovissodé, Chénangnon Frédéric Lokonon, Bruno Enagnon Glèlè Kakaï, Romain PLoS One Research Article The initial phase dynamics of an epidemic without containment measures is commonly well modelled using exponential growth models. However, in the presence of containment measures, the exponential model becomes less appropriate. Under the implementation of an isolation measure for detected infectives, we propose to model epidemic dynamics by fitting a flexible growth model curve to reported positive cases, and to infer the overall epidemic dynamics by introducing information on the detection/testing effort and recovery and death rates. The resulting modelling approach is close to the Susceptible-Infectious-Quarantined-Recovered model framework. We focused on predicting the peaks (time and size) in positive cases, active cases and new infections. We applied the approach to data from the COVID-19 outbreak in Italy. Fits on limited data before the observed peaks illustrate the ability of the flexible growth model to approach the estimates from the whole data. Public Library of Science 2020-10-20 /pmc/articles/PMC7575103/ /pubmed/33079964 http://dx.doi.org/10.1371/journal.pone.0240578 Text en © 2020 Frédéric Tovissodé et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Tovissodé, Chénangnon Frédéric
Lokonon, Bruno Enagnon
Glèlè Kakaï, Romain
On the use of growth models to understand epidemic outbreaks with application to COVID-19 data
title On the use of growth models to understand epidemic outbreaks with application to COVID-19 data
title_full On the use of growth models to understand epidemic outbreaks with application to COVID-19 data
title_fullStr On the use of growth models to understand epidemic outbreaks with application to COVID-19 data
title_full_unstemmed On the use of growth models to understand epidemic outbreaks with application to COVID-19 data
title_short On the use of growth models to understand epidemic outbreaks with application to COVID-19 data
title_sort on the use of growth models to understand epidemic outbreaks with application to covid-19 data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7575103/
https://www.ncbi.nlm.nih.gov/pubmed/33079964
http://dx.doi.org/10.1371/journal.pone.0240578
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