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On the use of growth models to understand epidemic outbreaks with application to COVID-19 data
The initial phase dynamics of an epidemic without containment measures is commonly well modelled using exponential growth models. However, in the presence of containment measures, the exponential model becomes less appropriate. Under the implementation of an isolation measure for detected infectives...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7575103/ https://www.ncbi.nlm.nih.gov/pubmed/33079964 http://dx.doi.org/10.1371/journal.pone.0240578 |
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author | Tovissodé, Chénangnon Frédéric Lokonon, Bruno Enagnon Glèlè Kakaï, Romain |
author_facet | Tovissodé, Chénangnon Frédéric Lokonon, Bruno Enagnon Glèlè Kakaï, Romain |
author_sort | Tovissodé, Chénangnon Frédéric |
collection | PubMed |
description | The initial phase dynamics of an epidemic without containment measures is commonly well modelled using exponential growth models. However, in the presence of containment measures, the exponential model becomes less appropriate. Under the implementation of an isolation measure for detected infectives, we propose to model epidemic dynamics by fitting a flexible growth model curve to reported positive cases, and to infer the overall epidemic dynamics by introducing information on the detection/testing effort and recovery and death rates. The resulting modelling approach is close to the Susceptible-Infectious-Quarantined-Recovered model framework. We focused on predicting the peaks (time and size) in positive cases, active cases and new infections. We applied the approach to data from the COVID-19 outbreak in Italy. Fits on limited data before the observed peaks illustrate the ability of the flexible growth model to approach the estimates from the whole data. |
format | Online Article Text |
id | pubmed-7575103 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-75751032020-10-26 On the use of growth models to understand epidemic outbreaks with application to COVID-19 data Tovissodé, Chénangnon Frédéric Lokonon, Bruno Enagnon Glèlè Kakaï, Romain PLoS One Research Article The initial phase dynamics of an epidemic without containment measures is commonly well modelled using exponential growth models. However, in the presence of containment measures, the exponential model becomes less appropriate. Under the implementation of an isolation measure for detected infectives, we propose to model epidemic dynamics by fitting a flexible growth model curve to reported positive cases, and to infer the overall epidemic dynamics by introducing information on the detection/testing effort and recovery and death rates. The resulting modelling approach is close to the Susceptible-Infectious-Quarantined-Recovered model framework. We focused on predicting the peaks (time and size) in positive cases, active cases and new infections. We applied the approach to data from the COVID-19 outbreak in Italy. Fits on limited data before the observed peaks illustrate the ability of the flexible growth model to approach the estimates from the whole data. Public Library of Science 2020-10-20 /pmc/articles/PMC7575103/ /pubmed/33079964 http://dx.doi.org/10.1371/journal.pone.0240578 Text en © 2020 Frédéric Tovissodé et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Tovissodé, Chénangnon Frédéric Lokonon, Bruno Enagnon Glèlè Kakaï, Romain On the use of growth models to understand epidemic outbreaks with application to COVID-19 data |
title | On the use of growth models to understand epidemic outbreaks with application to COVID-19 data |
title_full | On the use of growth models to understand epidemic outbreaks with application to COVID-19 data |
title_fullStr | On the use of growth models to understand epidemic outbreaks with application to COVID-19 data |
title_full_unstemmed | On the use of growth models to understand epidemic outbreaks with application to COVID-19 data |
title_short | On the use of growth models to understand epidemic outbreaks with application to COVID-19 data |
title_sort | on the use of growth models to understand epidemic outbreaks with application to covid-19 data |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7575103/ https://www.ncbi.nlm.nih.gov/pubmed/33079964 http://dx.doi.org/10.1371/journal.pone.0240578 |
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