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Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters
Significance: The optical properties of biological samples provide information about the structural characteristics of the tissue and any changes arising from pathological conditions. Optical coherence tomography (OCT) has proven to be capable of extracting tissue’s optical properties using a model...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society of Photo-Optical Instrumentation Engineers
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7575831/ https://www.ncbi.nlm.nih.gov/pubmed/33094126 http://dx.doi.org/10.1117/1.NPh.7.4.045005 |
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author | Yang, Jiarui Chen, Ichun Anderson Chang, Shuaibin Tang, Jianbo Lee, Blaire Kılıç, Kıvılcım Sunil, Smrithi Wang, Hui Varadarajan, Divya Magnain, Caroline Chen, Shih-Chi Costantini, Irene Pavone, Francesco Fischl, Bruce Boas, David A. |
author_facet | Yang, Jiarui Chen, Ichun Anderson Chang, Shuaibin Tang, Jianbo Lee, Blaire Kılıç, Kıvılcım Sunil, Smrithi Wang, Hui Varadarajan, Divya Magnain, Caroline Chen, Shih-Chi Costantini, Irene Pavone, Francesco Fischl, Bruce Boas, David A. |
author_sort | Yang, Jiarui |
collection | PubMed |
description | Significance: The optical properties of biological samples provide information about the structural characteristics of the tissue and any changes arising from pathological conditions. Optical coherence tomography (OCT) has proven to be capable of extracting tissue’s optical properties using a model that combines the exponential decay due to tissue scattering and the axial point spread function that arises from the confocal nature of the detection system, particularly for higher numerical aperture (NA) measurements. A weakness in estimating the optical properties is the inter-parameter cross-talk between tissue scattering and the confocal parameters defined by the Rayleigh range and the focus depth. Aim: In this study, we develop a systematic method to improve the characterization of optical properties with high-NA OCT. Approach: We developed a method that spatially parameterizes the confocal parameters in a previously established model for estimating the optical properties from the depth profiles of high-NA OCT. Results: The proposed parametrization model was first evaluated on a set of intralipid phantoms and then validated using a low-NA objective in which cross-talk from the confocal parameters is negligible. We then utilize our spatially parameterized model to characterize optical property changes introduced by a tissue index matching process using a simple immersion agent, 2,2’-thiodiethonal. Conclusions: Our approach improves the confidence of parameter estimation by reducing the degrees of freedom in the non-linear fitting model. |
format | Online Article Text |
id | pubmed-7575831 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Society of Photo-Optical Instrumentation Engineers |
record_format | MEDLINE/PubMed |
spelling | pubmed-75758312020-10-21 Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters Yang, Jiarui Chen, Ichun Anderson Chang, Shuaibin Tang, Jianbo Lee, Blaire Kılıç, Kıvılcım Sunil, Smrithi Wang, Hui Varadarajan, Divya Magnain, Caroline Chen, Shih-Chi Costantini, Irene Pavone, Francesco Fischl, Bruce Boas, David A. Neurophotonics Research Papers Significance: The optical properties of biological samples provide information about the structural characteristics of the tissue and any changes arising from pathological conditions. Optical coherence tomography (OCT) has proven to be capable of extracting tissue’s optical properties using a model that combines the exponential decay due to tissue scattering and the axial point spread function that arises from the confocal nature of the detection system, particularly for higher numerical aperture (NA) measurements. A weakness in estimating the optical properties is the inter-parameter cross-talk between tissue scattering and the confocal parameters defined by the Rayleigh range and the focus depth. Aim: In this study, we develop a systematic method to improve the characterization of optical properties with high-NA OCT. Approach: We developed a method that spatially parameterizes the confocal parameters in a previously established model for estimating the optical properties from the depth profiles of high-NA OCT. Results: The proposed parametrization model was first evaluated on a set of intralipid phantoms and then validated using a low-NA objective in which cross-talk from the confocal parameters is negligible. We then utilize our spatially parameterized model to characterize optical property changes introduced by a tissue index matching process using a simple immersion agent, 2,2’-thiodiethonal. Conclusions: Our approach improves the confidence of parameter estimation by reducing the degrees of freedom in the non-linear fitting model. Society of Photo-Optical Instrumentation Engineers 2020-10-21 2020-10 /pmc/articles/PMC7575831/ /pubmed/33094126 http://dx.doi.org/10.1117/1.NPh.7.4.045005 Text en © 2020 The Authors https://creativecommons.org/licenses/by/4.0/ Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI. |
spellingShingle | Research Papers Yang, Jiarui Chen, Ichun Anderson Chang, Shuaibin Tang, Jianbo Lee, Blaire Kılıç, Kıvılcım Sunil, Smrithi Wang, Hui Varadarajan, Divya Magnain, Caroline Chen, Shih-Chi Costantini, Irene Pavone, Francesco Fischl, Bruce Boas, David A. Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters |
title | Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters |
title_full | Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters |
title_fullStr | Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters |
title_full_unstemmed | Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters |
title_short | Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters |
title_sort | improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7575831/ https://www.ncbi.nlm.nih.gov/pubmed/33094126 http://dx.doi.org/10.1117/1.NPh.7.4.045005 |
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